Detailed Information for Phage Lysidious |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Mackenzie Bender |
Year Found | 2016 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | Not entered |
GPS Coordinates | 40.433333 N, 79.95 W Map |
Discovery Notes | Found on 1/25/16 in plant bed near snow. |
Naming Notes | After lysate, which I spent a lot of time collecting lysate. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Apr 22, 2016 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 874 |
Genome length (bp) | 50948 |
Character of genome ends | Unknown |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCGGTGA |
GC Content | 67.0% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Small, circular |
Morphotype | Siphoviridae |
Number of Genes | 83 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MF919521 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Ignore |
SEA Lysate Titer |
7.2e10 |
Date of SEA Lysate Titering |
Mar 16, 2016 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |