Detailed Information for Phage Obliviate |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Taylor Morgan |
Year Found | 2015 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 29°C |
GPS Coordinates | 40.4419 N, 79.9557 W Map |
Discovery Notes | The soil came from a flower bed with some trees nearby. It was a hot day around 84 degrees, dry. The soil was fairly dark. |
Naming Notes | The Harry Potter series inspired me to name this phage. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Nov 13, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 619 |
Genome length (bp) | 49286 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCGGTGA |
GC Content | 67.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Obliviate has 2 different morphologies. One is large and haloed, about 3 mm and the other is small and clear, about 1 mm. |
Number of Genes | 80 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KU963254 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
SEA Lysate Titer |
7*10^10 |
Date of SEA Lysate Titering |
Oct 13, 2015 |
Pitt Freezer Box# |
2 |
Pitt Freezer Box Grid# |
G12 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |