Detailed Information for Phage Petra |
Discovery Information |
Isolation Host | Gordonia westfalica NRRL B-24152 |
Found By | Matthew Montgomery |
Year Found | 2016 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Unknown |
Isolation Temperature | Not entered |
GPS Coordinates | 40.4468 N, 79.9542 W Map |
Discovery Notes | Petra was found as a single plaque on a plate in which I plated Emperor on G. westfalica (which should have been homoimmune). |
Naming Notes | Petra is named after the ancient city in Jordan, which I visited recently. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Sep 15, 2016 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 3183 |
Genome length (bp) | 52304 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TGGCCGGTGA |
GC Content | 67.1% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Number of Genes | 89 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MH153808 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
6 |
Pitt Freezer Box Grid# |
E7 |
Available Files |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |