Gordonia phage Petra
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Detailed Information for Phage Petra
Discovery Information
Isolation HostGordonia westfalica NRRL B-24152
Found ByMatthew Montgomery
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.4468 N, 79.9542 W Map
Discovery NotesPetra was found as a single plaque on a plate in which I plated Emperor on G. westfalica (which should have been homoimmune).
Naming NotesPetra is named after the ancient city in Jordan, which I visited recently.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 15, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3183
Genome length (bp)52304
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGGCCGGTGA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes89
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Petra_1
(terminase small subunit)

Petra_2
(terminase large subunit)

Petra_3
(portal protein)

Petra_4
(capsid maturation protease)

Petra_5
(scaffolding protein)

Petra_6
(major capsid protein)

Petra_7

Petra_8

Petra_9
(head-to-tail stopper)

Petra_10

Petra_11

Petra_12

Petra_13

Petra_14

Petra_15
(tail terminator)

Petra_16
(major tail protein)

Petra_17
(tail assembly chaperone)

Petra_18
(tail assembly chaperone)

Petra_19
(tape measure protein)

Petra_20
(minor tail protein)

Petra_21
(minor tail protein)

Petra_22
(lysin A)

Petra_23

Petra_24

Petra_25

Petra_26

Petra_27
(lysin B)

Petra_28

Petra_29
(minor tail protein)

Petra_30
(minor tail protein)

Petra_31

Petra_32
(minor tail protein)

Petra_33
(acetyltransferase)

Petra_34

Petra_35

Petra_36

Petra_37
(tyrosine integrase)

Petra_38

Petra_39
(immunity repressor)

Petra_40
(helix-turn-helix DNA binding protein)

Petra_41

Petra_42

Petra_43

Petra_44

Petra_45

Petra_46

Petra_47

Petra_48

Petra_49

Petra_50

Petra_51

Petra_52

Petra_53
(DnaQ-like DNA polymerase III subunit)

Petra_54

Petra_55
(exonuclease)

Petra_56
(RecT-like ssDNA binding protein)

Petra_57

Petra_58

Petra_59

Petra_60

Petra_61

Petra_62

Petra_63

Petra_64

Petra_65

Petra_66

Petra_67

Petra_68

Petra_69
(DNA methylase)

Petra_70

Petra_71

Petra_72
(HNH endonuclease)

Petra_73

Petra_74
(HNH endonuclease)

Petra_75

Petra_76

Petra_77

Petra_78

Petra_79

Petra_80
(RuvC-like resolvase)

Petra_81

Petra_82

Petra_83

Petra_84
(helix-turn-helix DNA binding protein)

Petra_85

Petra_86

Petra_87

Petra_88

Petra_89
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH153808
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 6
Pitt Freezer Box Grid# E7
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload