| Detailed Information for Phage Phomeo | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Visakuo Tsurho |
| Year Found | 2021 |
| Location Found | Grand Rapids, MI Kent County |
| Finding Institution | Calvin University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 42.893333 N, 85.7383 W Map |
| Discovery Notes | Discovered from Professor Wertz's compost. The compost was directly adjacent to a garden and a lilac bush. It was dark, very organic, and slightly damp. |
| Naming Notes | Phage is named after Romeo but with a Ph. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 25, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 696 |
| Genome length (bp) | 67458 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGCCGCGTAC |
| GC Content | 65.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CR |
| Subcluster | CR2 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewDalilpop (CR1) Flapper (CR1) GRU1 (CR1) GTE5 (CR1) Turuncu (CR1) Arti (CR2) Bonum (CR2) Buggaboo (CR2) Commandaria (CR2) Emianna (CR2) Foxboro (CR2) GrootJr (CR2) GTE8 (CR2) Jifall16 (CR2) Kabluna (CR2) KidneyBean (CR2) Kurt (CR2) MerCougar (CR2) NatB6 (CR2) NosilaM (CR2) NovumRegina (CR2) Outis (CR2) Phomeo (CR2) StarStruck (CR2) SuperSulley (CR2) Tracker (CR2) Wheezy (CR2) Ennea (CR3) Float294 (CR3) Lollipop1437 (CR3) Patio (CR3) RedRaider (CR3) Skysand (CR3) BiPauneto (CR4) HubbaBubba (CR4) IDyn (CR4) Marietta (CR4) NadineRae (CR4) Sukkupi (CR4) WhoseManz (CR4) Yndexa (CR4) Fury (CR5) Pleakley (CR5) Scuba (CR5) Apiary (CR6) Braxoaddie (CR6) CoffeeBean (CR6) GuyFagieri (CR6) Maselop (CR6) Polyyuki (CR6) MacGully (CR7) |
| Annotating Institution | Calvin University |
| Annotation Status | QC Complete |
| Plaque Notes | Medium-sized, translucent clearing, and slightly circular. |
| Number of Genes | 93 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewPhomeo_1 Phomeo_2 Phomeo_3 Phomeo_4 Phomeo_5 Phomeo_6 Phomeo_7 Phomeo_8 Phomeo_9 Phomeo_10 Phomeo_11 Phomeo_12 Phomeo_13 Phomeo_14 Phomeo_15 Phomeo_16 Phomeo_17 Phomeo_18 Phomeo_19 Phomeo_20 Phomeo_21 Phomeo_22 Phomeo_23 Phomeo_24 Phomeo_25 Phomeo_26 Phomeo_27 Phomeo_28 Phomeo_29 Phomeo_30 Phomeo_31 Phomeo_32 Phomeo_33 Phomeo_34 Phomeo_35 Phomeo_36 Phomeo_37 Phomeo_38 Phomeo_39 Phomeo_40 Phomeo_41 Phomeo_42 Phomeo_43 Phomeo_44 Phomeo_45 Phomeo_46 Phomeo_47 Phomeo_48 Phomeo_49 Phomeo_50 Phomeo_51 Phomeo_52 Phomeo_53 Phomeo_54 Phomeo_55 Phomeo_56 Phomeo_57 Phomeo_58 Phomeo_59 Phomeo_60 Phomeo_61 Phomeo_62 Phomeo_63 Phomeo_64 Phomeo_65 Phomeo_66 Phomeo_67 Phomeo_68 Phomeo_69 Phomeo_70 Phomeo_71 Phomeo_72 Phomeo_73 Phomeo_74 Phomeo_75 Phomeo_76 Phomeo_77 Phomeo_78 Phomeo_79 Phomeo_80 Phomeo_81 Phomeo_82 Phomeo_83 Phomeo_84 Phomeo_85 Phomeo_86 Phomeo_87 Phomeo_88 Phomeo_89 Phomeo_90 Phomeo_91 Phomeo_92 Phomeo_93 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 142 |
| Pitt Freezer Box Grid# | F9 |
| Available Files | |
| GenBank File for Phamerator | Download |