Gordonia phage UmaThurman
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Detailed Information for Phage UmaThurman
Discovery Information
Isolation HostGordonia terrae 3612
Found ByCharles Willis
Year Found2015
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.440746 N, 79.953925 W Map
Naming NotesJimi hendrix rules
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 12, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1434
Genome length (bp)50127
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCTCCGGTGA
GC Content67.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesSmall circular plaques
MorphotypeSiphoviridae
Number of Genes83
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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UmaThurman_1
(terminase small subunit)

UmaThurman_2
(terminase large subunit)

UmaThurman_3
(portal protein)

UmaThurman_4
(capsid maturation protease)

UmaThurman_5
(scaffolding protein)

UmaThurman_6
(major capsid protein)

UmaThurman_7

UmaThurman_8
(head-to-tail adaptor)

UmaThurman_9
(head-to-tail stopper)

UmaThurman_10

UmaThurman_11

UmaThurman_12

UmaThurman_13
(tail terminator)

UmaThurman_14
(major tail protein)

UmaThurman_15
(tail assembly chaperone)

UmaThurman_16
(tail assembly chaperone)

UmaThurman_17
(tape measure protein)

UmaThurman_18
(minor tail protein)

UmaThurman_19
(minor tail protein)

UmaThurman_20
(lysin A, L-Ala-D-Glu peptidase domain)

UmaThurman_21
(lysin A, glycosyl hydrolase domain)

UmaThurman_22

UmaThurman_23

UmaThurman_24

UmaThurman_25
(lysin B)

UmaThurman_26

UmaThurman_27
(minor tail protein)

UmaThurman_28
(minor tail protein)

UmaThurman_29

UmaThurman_30
(minor tail protein)

UmaThurman_31

UmaThurman_32

UmaThurman_33

UmaThurman_34

UmaThurman_35
(tyrosine integrase)

UmaThurman_36
(immunity repressor)

UmaThurman_37
(helix-turn-helix DNA binding protein)

UmaThurman_38

UmaThurman_39

UmaThurman_40

UmaThurman_41

UmaThurman_42

UmaThurman_43

UmaThurman_44

UmaThurman_45

UmaThurman_46

UmaThurman_47

UmaThurman_48

UmaThurman_49

UmaThurman_50

UmaThurman_51

UmaThurman_52

UmaThurman_53

UmaThurman_54

UmaThurman_55
(exonuclease)

UmaThurman_56
(RecT-like ssDNA binding protein)

UmaThurman_57

UmaThurman_58

UmaThurman_59

UmaThurman_60

UmaThurman_61

UmaThurman_62

UmaThurman_63

UmaThurman_64

UmaThurman_65

UmaThurman_66

UmaThurman_67

UmaThurman_68

UmaThurman_69

UmaThurman_70

UmaThurman_71

UmaThurman_72

UmaThurman_73

UmaThurman_74

UmaThurman_75

UmaThurman_76

UmaThurman_77

UmaThurman_78

UmaThurman_79

UmaThurman_80

UmaThurman_81

UmaThurman_82

UmaThurman_83
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU963251
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 3
Pitt Freezer Box Grid# A7
Available Files
Final DNAMaster FileDownload