Gordonia phage Wocket
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Detailed Information for Phage Wocket
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByLake Winter
Year Found2018
Location FoundManhattan, KS USA
Finding InstitutionKansas State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature26°C
GPS Coordinates39.182607 N, 96.583822 W Map
Discovery Notes-Ambient Temperature: 78 degrees F
-Found in an alley behind Eugene Field
-Relative moisture / relative organic content
-1 inch below surface
Naming NotesNamed after the Wocket created by Dr. Seuss
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 29, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage811
Genome length (bp)49767
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGCCGGTGA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionKansas State University
Annotation StatusIn GenBank
Plaque NotesPunctate measuring .75 to 1.0 mm in diameter
Turbid with undefined edges
Slow development (2 to 4 days for formation)

Phage measuements:
Capsid:57.7 nm by 59.7 nm
Tail:260nm
Number of Genes79
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Wocket_1
(terminase small subunit)

Wocket_2
(terminase large subunit)

Wocket_3
(portal protein)

Wocket_4
(capsid maturation protease)

Wocket_5
(scaffolding protein)

Wocket_6
(major capsid protein)

Wocket_7

Wocket_8

Wocket_9

Wocket_10
(head-to-tail stopper)

Wocket_11

Wocket_12

Wocket_13

Wocket_14
(tail terminator)

Wocket_15
(major tail protein)

Wocket_16
(tail assembly chaperone)

Wocket_17
(tail assembly chaperone)

Wocket_18
(tape measure protein)

Wocket_19
(minor tail protein)

Wocket_20
(minor tail protein)

Wocket_21
(lysin A, protease C39 domain)

Wocket_22

Wocket_23

Wocket_24

Wocket_25

Wocket_26

Wocket_27
(lysin B)

Wocket_28

Wocket_29
(minor tail protein)

Wocket_30

Wocket_31

Wocket_32

Wocket_33
(minor tail protein)

Wocket_34

Wocket_35

Wocket_36

Wocket_37

Wocket_38

Wocket_39
(serine integrase)

Wocket_40
(helix-turn-helix DNA binding protein)

Wocket_41
(helix-turn-helix DNA binding protein)

Wocket_42
(immunity repressor)

Wocket_43
(helix-turn-helix DNA binding protein)

Wocket_44

Wocket_45
(antirepressor)

Wocket_46

Wocket_47

Wocket_48

Wocket_49

Wocket_50

Wocket_51

Wocket_52

Wocket_53

Wocket_54

Wocket_55

Wocket_56

Wocket_57
(DnaQ-like DNA polymerase III subunit)

Wocket_58
(exonuclease)

Wocket_59
(RecT-like ssDNA binding protein)

Wocket_60

Wocket_61

Wocket_62

Wocket_63

Wocket_64
(DnaJ-like chaperonin)

Wocket_65

Wocket_66
(DNA methylase)

Wocket_67

Wocket_68
(HNH endonuclease)

Wocket_69

Wocket_70

Wocket_71

Wocket_72

Wocket_73

Wocket_74
(RuvC-like resolvase)

Wocket_75

Wocket_76

Wocket_77

Wocket_78

Wocket_79
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN585963
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.0 X10^10
Pitt Freezer Box# 80
Pitt Freezer Box Grid# G11
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload