| Detailed Information for Phage YorkOnyx |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Jerod Trexler |
| Year Found | 2019 |
| Location Found | Cheltenham, PA US |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.061944 N, 75.116667 W Map |
| Discovery Notes | Collected in a Ziplock bag. Taken from soil near an airport and used 6 days later. |
| Naming Notes | My first pet, a cat, was named Onyx, the name was taken, so I added a city near me to the front of the name to provide uniqueness. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 8, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1393 |
| Genome length (bp) | 57430 |
| Character of genome ends | Circularly Permuted |
| GC Content | 68.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DE |
| Subcluster | DE1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | The plaque is mostly clear with a turbid ring around the cleared center. The plaques were larger than 2mm in diameter. |
| Morphotype | Siphoviridae |
| Number of Genes | 84 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT723941 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
5x10^10 |
| Pitt Freezer Box# |
115 |
| Pitt Freezer Box Grid# |
E12 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
