Detailed Information for Phage Hitter |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Enrique Garcia-Assad |
Year Found | 2019 |
Location Found | Pittsburgh, PA United States |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 40.434668 N, 79.952122 W Map |
Discovery Notes | Found in a sample taken from a tree-lined median in the middle of a residential street. |
Naming Notes | Named after a song by artist Travis Scott called "Highest in the Room" |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 6, 2020 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 2168 |
Genome length (bp) | 47297 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCGGTGA |
GC Content | 67.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | Clearings are turbid - clear in appearance (more turbid in lower concentrations), and circular measuring about 2-3 mm in diameter. |
Morphotype | Siphoviridae |
Number of Genes | 77 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MT723936 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
114 |
Pitt Freezer Box Grid# |
E1 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |