The Actinobacteriophage Database

Mycobacterium phage Dingo

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Detailed Information for Phage Dingo
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Justina Leo
Year Found	2014
Location Found	Los Angeles, CA USA
Finding Institution	University of California, Los Angeles
Program	Unavailable
From enriched soil sample?	Yes
Isolation Temperature	35°C
GPS Coordinates	34.057 N, 118.445 W Map
Discovery Notes	Discovery Notes: Phage Dingo was collected by Justina Leo on April 2, 2014, in an urban area in Los Angeles, next to a road and under a tree between a footpath and building. Phage was isolated and characterized by Team Phage Rage (Amber Li, Justina Leo, Carmen Ng, Ryan Narbutas). TA: Emma Goodwin, Instructor: Jordan Moberg Parker, Laboratory Support: Krisanavane Reddi. Phage Dingo was annotated by Team Plaquestreak Boys (Ryan Chen, Shane Fox, Neil Patel, Jonika Weerasekare) and by Team Why You Always Lysin’ (Angelo Chengcuenca, Jonathon Sison, Yuhao Wang). Instructor: Giorgia Pirino.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Feb 16, 2015
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	7887
Genome length (bp)	67776
Character of genome ends	Circularly Permuted
GC Content	66.6%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	B
Subcluster	B1
Cluster Life Cycle	Lytic
Lysogeny Notes	No evidence for lysogeny due to plaque morphology and absence of lysogeny-associated genes.
Other Cluster Members	Click to View AbsoluteMadLad (B1) ABU (B1) Adriana (B1) Aelin (B1) AltPhacts (B1) Altwerkus (B1) Anderson (B1) Andre (B1) AngelCake (B1) Antonia (B1) Apizium (B1) Ashraf (B1) Badfish (B1) Banjo (B1) Basato (B1) BatteryCK (B1) Beaglebox (B1) Bishoperium (B1) BlackStallion (B1) BlueHusk (B1) Bluephacebaby (B1) Boehler (B1) Brilliant (B1) Buckeye (B1) Burr (B1) CamL (B1) CampRoach (B1) Cannibal (B1) Carthage (B1) Caspiboi (B1) Chaelin (B1) Chah (B1) Charles1 (B1) CharlieGBrown (B1) CheetO (B1) Cher (B1) Childish (B1) Chipette (B1) Chorkpop (B1) Chunky (B1) Chute (B1) Cobra (B1) Colbert (B1) Coletti (B1) Cornbread (B1) Cornobble (B1) Cosmolli16 (B1) Craff (B1) Crownjwl (B1) DaddyDaniels (B1) Daffy (B1) Daka (B1) Dati (B1) DelRivs (B1) Derpp (B1) Dice (B1) Dingo (B1) Dione (B1) DirtJuice (B1) Doddsville (B1) DoesntMatter (B1) DonSanchon (B1) DuchessDung (B1) Duggie (B1) Durga (B1) ElvisPhasley (B1) Emiris (B1) EmpTee (B1) Eremos (B1) Etaye (B1) Eugenia (B1) Fang (B1) FluffyNinja (B1) Fozzie (B1) Frankicide (B1) FremontTroll (B1) Freya (B1) FriarPreacher (B1) Fringe (B1) FugateOSU (B1) Gareth (B1) GeneCoco (B1) Giraffe (B1) Gophee (B1) Grand2040 (B1) Gwennie1 (B1) Gwilliam (B1) Gyarad (B1) Haimas (B1) Haleema (B1) Hamish (B1) Hartsy (B1) Harvey (B1) Held (B1) HenryJackson (B1) Hertubise (B1) Hetaeria (B1) HighStump (B1) Hocus (B1) Horchata (B1) HSavage (B1) ImtiyazSitla (B1) Inchworm (B1) Inverness (B1) Iridessa (B1) Iridoclysis (B1) IsaacEli (B1) JacAttac (B1) JakeO (B1) JangoPhett (B1) JDog (B1) Jesabah (B1) Jillium (B1) Jiminy (B1) Jiraiya (B1) Kahve (B1) Kailash (B1) Katniss (B1) Keitherie (B1) Khan1 (B1) Kikipoo (B1) Kimbrough (B1) KingTut (B1) KingVeVeVe (B1) KlimbOn (B1) Kloppinator (B1) KLucky39 (B1) Kwadwo (B1) Kwksand96 (B1) Labeouficaum (B1) LasagnaCat (B1) Lasso (B1) LeeLot (B1) Lego3393 (B1) Legolas (B1) Lehmann (B1) LeiMonet (B1) LemonSlice (B1) Longacauda (B1) Lopsy (B1) LostAndPhound (B1) LuckyMarjie (B1) Lulumae (B1) Lulwa (B1) Lumine (B1) Mag7 (B1) Magic8 (B1) Mana (B1) Manad (B1) Maru (B1) Maskar (B1) Matalotodo (B1) Mcshane (B1) Mecca (B1) Megamind20 (B1) Megatron (B1) Melc17 (B1) MelsMeow (B1) Mesh1 (B1) Mesmerelda (B1) MichaelPhcott (B1) Mikota (B1) MiniBoss (B1) MitKao (B1) Morgushi (B1) Morty (B1) Mosaic (B1) MRabcd (B1) MrPhizzler (B1) Mulan (B1) Murdoc (B1) Mutante (B1) Nacho (B1) Nathan (B1) Newman (B1) Nicole21 (B1) Numberten (B1) Nyala (B1) Olak (B1) Oline (B1) Olive (B1) OliverWalter (B1) Omniscient (B1) Oosterbaan (B1) Orfeu (B1) Orion (B1) Orwigg (B1) OSmaximus (B1) Pacifista (B1) PG1 (B1) Phamished (B1) Phareon (B1) PhatCats2014 (B1) PhatLouie (B1) PhenghisKhan (B1) Pherdinand (B1) Phergie (B1) Phipps (B1) Phleuron (B1) PhrankReynolds (B1) PhrodoBaggins (B1) Phunky (B1) Piglet (B1) PinheadLarry (B1) Pinkman (B1) Pipsqueak (B1) Placalicious (B1) Plata (B1) Plmatters (B1) Podrick (B1) Pops (B1) Potter (B1) Prickles (B1) ProfessorX (B1) Puhltonio (B1) QueenBeane (B1) Quisquiliae (B1) RedMaple (B1) Ricotta (B1) Riggan (B1) Rimu (B1) Riverton (B1) Robyn (B1) Roliet (B1) Roscoe (B1) Roy17 (B1) Samaymay (B1) SassyCat97 (B1) Schadenfreude (B1) Schueller (B1) Scoot17C (B1) Scrick (B1) SDcharge11 (B1) Selr12 (B1) Serendipity (B1) Serpentine (B1) Sheila (B1) ShiVal (B1) Sigman (B1) SilverBell (B1) Simielle (B1) SirBeauregard (B1) Skippy (B1) Slatt (B1) Soile (B1) Solosis (B1) Sophia (B1) Soto (B1) Spartan300 (B1) Squid (B1) Squiggle (B1) Struggle (B1) Suffolk (B1) Surely (B1) Swiphy (B1) Swish (B1) TallGrassMM (B1) Telesworld (B1) Thora (B1) ThreeOh3D2 (B1) Thunderbird (B1) Timmi (B1) TomBombadil (B1) Tomlarah (B1) Toni (B1) TooFast2Furius (B1) Tooj (B1) Triad (B1) True (B1) Trypo (B1) TyrionL (B1) UAch1 (B1) UncleHowie (B1) Usavi (B1) Vaishali24 (B1) Valjean (B1) Vaticameos (B1) Veritas (B1) Virapocalypse (B1) Virgeve (B1) Vista (B1) Vivaldi (B1) Vortex (B1) Wallhey (B1) Waterdiva (B1) Weher20 (B1) Windsor (B1) Xavier (B1) Yoshand (B1) YouGoGlencoco (B1) Zaider (B1) Zelda (B1) Zonia (B1) Imvubu (B10) Indlovu (B11) LilMcDreamy (B12) BirdsNest (B13) Hashim76 (B13) LittleMinkey (B13) Zenteno07 (B13) Allegro (B2) Arbiter (B2) Ares (B2) Bananafish (B2) Blocker23 (B2) Boyle (B2) Brownie5 (B2) Calamitous (B2) Coffee (B2) Eaglehorse (B2) Faze9 (B2) FrenchFry (B2) Glass (B2) Godines (B2) Hedgerow (B2) Holeinone (B2) ItsyBitsy1 (B2) Kaleb (B2) Kheth (B2) Kolhan (B2) Lars (B2) Laurie (B2) Lephleur (B2) LilSmirk (B2) LizLemon (B2) MasterPo (B2) Opia (B2) Phantasmagoria (B2) PrinceCharming (B2) Qyrzula (B2) Rhinoforte (B2) Rosebush (B2) Sabella (B2) TA17A (B2) Tinciduntsolum (B2) Tres (B2) Vic9 (B2) West99 (B2) Abinghost (B3) Akoma (B3) Athena (B3) Audrey (B3) Baloo (B3) Ben11 (B3) Bernardo (B3) Briakila (B3) Casbah (B3) ChaChing (B3) Chalmers (B3) Chandler (B3) Chentzyk (B3) Compostia (B3) Corofin (B3) Daisy (B3) Deenasa (B3) Devonte (B3) Gadjet (B3) Gervas (B3) GlenHope (B3) Glubnar (B3) Halfpint (B3) HarveySr (B3) Heathcliff (B3) Jackstina (B3) Kamiyu (B3) Kronus (B3) LestyG (B3) Marley1013 (B3) Marlia (B3) MmasiCarm (B3) Mortcellus (B3) Morty007 (B3) Neos5 (B3) Nozo (B3) Obutu (B3) Olivio (B3) OrangeOswald (B3) Phaedrus (B3) Phayeta (B3) Philly (B3) Phlyer (B3) Pipefish (B3) RagingRooster (B3) Rita1961 (B3) RomaT (B3) Shenandoah (B3) SlippinJimmy (B3) SwainyDoc (B3) SynergyX (B3) TinyTerror (B3) Tydolla (B3) Yahalom (B3) Yinz (B3) Ahwei (B4) AlanGrant (B4) Antihero (B4) Apex (B4) Austelle (B4) BobbyK (B4) BrownCNA (B4) ChrisnMich (B4) Cooper (B4) Epah (B4) Fanaw (B4) Fortunato (B4) Frederick (B4) GinPorsche (B4) Hally898 (B4) Hangman (B4) Heath (B4) Hydro (B4) JaguarMi (B4) JAMaL (B4) Lambano (B4) Lolalove (B4) Magpie (B4) Mithril (B4) Mudslide (B4) Nanao (B4) Nigel (B4) Poster (B4) Prince (B4) QueenPie (B4) RawrgerThat (B4) Stinger (B4) Vincenzo (B4) VioletZ (B4) Waleliano (B4) Xincheng (B4) Zemanar (B4) Acadian (B5) Baee (B5) DigitDog (B5) Donny (B5) EastView9101 (B5) KarasumaRum (B5) Mysterious (B5) Nangang (B5) Nehemiah (B5) Phelemich (B5) Reprobate (B5) Rich (B5) Rita130 (B5) Serendipitous (B5) Shenyu (B5) SirJeffery (B5) StinkyVeggy (B5) Suigeneris (B5) 39HC (B6) 40BC (B6) ForDig (B6) Hosp (B6) Jolie1 (B6) KayaCho (B6) Saguaro (B7) Thonko (B8) CRB2 (B9) Funsized (B9) Knocker (B9) PenguinLover67 (B9) Quesadilla (B9) Rinkes (B9)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Dingo has a turbid morphology with faint halo and milky glaze appearance. In the 10-6 dilution plate of the Midi-lysate, the plaques ranged from diameters of 2.840mm to 6.056 mm. The average plaque diameter was 3.846 ± 0.771mm. In the web lysis plate at 10-5 dilution of the Midi-lysate, the turbid plaques were easily distinguished by their turbidity and presence of turbid halos
Morphotype	Siphoviridae
Number of Genes	98
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Dingo_1 (adenylate kinase) Dingo_2 (terminase) Dingo_3 Dingo_4 Dingo_5 Dingo_6 (RuvC-like resolvase) Dingo_7 Dingo_8 (portal protein) Dingo_9 (capsid maturation protease and MuF-like fusion protein) Dingo_10 (HNH endonuclease) Dingo_11 Dingo_12 (major capsid hexamer protein) Dingo_13 (major capsid pentamer protein) Dingo_14 Dingo_15 Dingo_16 Dingo_17 Dingo_18 (major tail protein) Dingo_19 Dingo_20 (queuine tRNA-ribosyltransferase) Dingo_21 Dingo_22 (head-to-tail adaptor) Dingo_23 Dingo_24 Dingo_25 (tail assembly chaperone) Dingo_26 Dingo_27 Dingo_28 (tape measure protein) Dingo_29 (minor tail protein) Dingo_30 (minor tail protein) Dingo_31 (minor tail protein) Dingo_32 (minor tail protein) Dingo_33 (minor tail protein) Dingo_34 Dingo_35 Dingo_36 Dingo_37 Dingo_38 Dingo_39 Dingo_40 Dingo_41 Dingo_42 Dingo_43 Dingo_44 Dingo_45 (helix-turn-helix DNA binding domain protein) Dingo_46 (helix-turn-helix DNA binding domain protein) Dingo_47 Dingo_48 (lysin A) Dingo_49 (lysin B) Dingo_50 Dingo_51 Dingo_52 (DNA helicase) Dingo_53 Dingo_54 Dingo_55 Dingo_56 (DNA primase/helicase) Dingo_57 Dingo_58 Dingo_59 (DNA polymerase I) Dingo_60 Dingo_61 Dingo_62 Dingo_63 Dingo_64 Dingo_65 Dingo_66 Dingo_67 Dingo_68 Dingo_69 Dingo_70 Dingo_71 Dingo_72 Dingo_73 Dingo_74 Dingo_75 Dingo_76 Dingo_77 Dingo_78 Dingo_79 Dingo_80 Dingo_81 (HNH endonuclease) Dingo_82 Dingo_83 Dingo_84 Dingo_85 Dingo_86 Dingo_87 Dingo_88 Dingo_89 Dingo_90 Dingo_91 Dingo_92 Dingo_93 Dingo_94 Dingo_95 Dingo_96 Dingo_97 Dingo_98
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MF919503
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	23
Pitt Freezer Box Grid#	D4
Available Files
Plaque Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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