Mycobacterium phage Vivaldi
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Vivaldi
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJulia Stimpfl
Year Found2013
Location FoundColumbus, OH Franklin
Finding InstitutionThe Ohio State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.007124 N, 83.035129 W Map
Discovery NotesVivaldi was isolated from a sample of moist compost from The Ohio State Agricultural and Natural Resources Laboratory in September of 2013. The compost contained decomposing cabbage, onions and tomatoes.
Naming NotesThe phage Vivaldi was named after the discoverer's beloved Belgian Warmblood horse, Vivaldi (Jimbo).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 21, 2014
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage241
Genome length (bp)68873
Character of genome endsCircularly Permuted
GC Content66.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB1
Other Cluster Members

Click to View

Alis (None)

Azarath (None)

BigMau (None)

BlaqueIvy (None)

Cally (None)

Camden (None)

Ceci11 (None)

ChrIke (None)

Conway (None)

CptKIRK (None)

DaHileesi (None)

Kerrigan (None)

Loadofcarp (None)

Mage (None)

Meraxes (None)

Muus (None)

Olive00 (None)

Pallavicini (None)

RoseLilly (None)

Skye (None)

Themis (None)

ABU (B1)

Alex (B1)

Altwerkus (B1)

APE308 (B1)

Apizium (B1)

Ashraf (B1)

AstrumP28 (B1)

AyJay1824 (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

BengaliBalla92 (B1)

Beni05 (B1)

BlackStallion (B1)

BRod943 (B1)

Buckeye (B1)

BullsEye (B1)

Cannibal (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Coffean (B1)

Colbert (B1)

Cosmolli16 (B1)

Cowgirl (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

Ditto (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

DuffyC (B1)

Durga (B1)

Egahp (B1)

EmmyMG (B1)

EmpTee (B1)

Eremos (B1)

Fang (B1)

Ferhersher (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

Frogger (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Giddykiddy (B1)

Girly (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Horchata (B1)

ImtiyazSitla (B1)

Inkblot (B1)

IPP (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JangoPhett (B1)

Jbone (B1)

Jillium (B1)

Josephine (B1)

Kailash (B1)

Kat63 (B1)

Keitherie (B1)

Kikipoo (B1)

KingTut (B1)

KingVeVeVe (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Legion (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LoveandHonor (B1)

LuckyMarjie (B1)

Lulu100 (B1)

Lulumae (B1)

Mag7 (B1)

Malkin71 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Megatron (B1)

Mesh1 (B1)

Mikota (B1)

Mistert4 (B1)

MitKao (B1)

Morbach (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Novak (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

Pacos19 (B1)

Pearsonia (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Pickrel13 (B1)

Piglet (B1)

PinkLady16 (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Pops (B1)

Potter (B1)

Prann (B1)

ProfessorX (B1)

Puhltonio (B1)

PuraVida (B1)

Pyro (B1)

RedMaple (B1)

Rfink25 (B1)

Riggan (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

Scooterbug (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Speckles (B1)

Squid (B1)

Squiggle (B1)

Squirt12 (B1)

Steve27 (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Thora (B1)

ThreeOh3D2 (B1)

Tigris (B1)

Timmi (B1)

TomBombadil (B1)

Tre (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

Ulysses2016 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vivamus (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Wunderlich (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Ypsitucky (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Arbiter (B2)

Ares (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Julius (B2)

Kheth (B2)

Laurie (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Rstan (B2)

Sabella (B2)

TA17A (B2)

Tinciduntsolum (B2)

Tres (B2)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

CharlesTrout (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Gulsi (B3)

Heathcliff (B3)

Kamiyu (B3)

Littleengine (B3)

Mortcellus (B3)

NOZO (B3)

OrangeOswald (B3)

Phaedrus (B3)

Phlyer (B3)

Pipefish (B3)

RomaT (B3)

SassBadger (B3)

Yahalom (B3)

Zollars18 (B3)

Adawi (B4)

AlanGrant (B4)

Bane1 (B4)

Bane2 (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Halloween (B4)

JAMaL (B4)

LeapingLizzy (B4)

Nigel (B4)

Paliothales9 (B4)

RawrgerThat (B4)

Skruzzles (B4)

Stinger (B4)

TheRipper (B4)

Tvorc (B4)

Vincenzo (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Plaque NotesVivaldi displays both small, under 0.1 cm, and large, about 0.2 cm, plaque morphologies. The borders of the plaques exhibited by Vivaldi are generally crisp.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes102
Has been Phamerated?Yes
Gene List

Click to View

Vivaldi_1
(Terminase small subunit)

Vivaldi_2
(Terminase large subunit)

Vivaldi_3

Vivaldi_4

Vivaldi_5

Vivaldi_6
(RuvC resolvase)

Vivaldi_7

Vivaldi_8
(portal)

Vivaldi_9
(capsid morphogenesis protein)

Vivaldi_10

Vivaldi_11

Vivaldi_12
(Major capsid protein)

Vivaldi_13

Vivaldi_14

Vivaldi_15

Vivaldi_16

Vivaldi_17

Vivaldi_18
(Major tail protein)

Vivaldi_19

Vivaldi_20
(queuine tRNA-ribosyltransferase)

Vivaldi_21

Vivaldi_22

Vivaldi_23

Vivaldi_24

Vivaldi_25
(Tail assembly chaperone)

Vivaldi_26

Vivaldi_27

Vivaldi_28
(Tapemeasure)

Vivaldi_29
(Minor tail subunit)

Vivaldi_30
(Minor tail subunit)

Vivaldi_31
(Minor tail subunit)

Vivaldi_32
(minor tail protein)

Vivaldi_33
(Minor tail subunit)

Vivaldi_34
(Minor tail subunit)

Vivaldi_35

Vivaldi_36

Vivaldi_37

Vivaldi_38

Vivaldi_39

Vivaldi_40

Vivaldi_41

Vivaldi_42

Vivaldi_43

Vivaldi_44

Vivaldi_45

Vivaldi_46
(HTH DNA binding domain)

Vivaldi_47

Vivaldi_48

Vivaldi_49
(Lysin A)

Vivaldi_50
(Lysin B)

Vivaldi_51

Vivaldi_52

Vivaldi_53

Vivaldi_54
(Helicase)

Vivaldi_55

Vivaldi_56

Vivaldi_57

Vivaldi_58

Vivaldi_59
(DNA primase/helicase)

Vivaldi_60

Vivaldi_61

Vivaldi_62
(DNA polymerase I)

Vivaldi_63

Vivaldi_64
(RDF protein)

Vivaldi_65

Vivaldi_66

Vivaldi_67

Vivaldi_68

Vivaldi_69

Vivaldi_70
(RNaseE)

Vivaldi_71

Vivaldi_72

Vivaldi_73
(PLA2 protein)

Vivaldi_74

Vivaldi_75

Vivaldi_76

Vivaldi_77

Vivaldi_78

Vivaldi_79

Vivaldi_80

Vivaldi_81

Vivaldi_82

Vivaldi_83

Vivaldi_84

Vivaldi_85

Vivaldi_86

Vivaldi_87

Vivaldi_88

Vivaldi_89

Vivaldi_90

Vivaldi_91

Vivaldi_92

Vivaldi_93

Vivaldi_94

Vivaldi_95

Vivaldi_96

Vivaldi_97

Vivaldi_98

Vivaldi_99

Vivaldi_100

Vivaldi_101

Vivaldi_102

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKM347890
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload