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Mycobacterium phage Pipsqueak
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Detailed Information for Phage Pipsqueak
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByChamplin Park H.S. Microbiology Club
Year Found2011
Location FoundMaple Grove, MN USA
Finding InstitutionChamplin Park High School
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesThe sample was from the compost at the Lynde Garden Center and Nursery in Maple Grove, MN. It was obtained in early October, 2011.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedOct 12, 2012
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage75
Genome length (bp)68328
Character of genome endsCircularly Permuted
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB1
Other Cluster Members

Click to View

Alis (None)

Azarath (None)

BigMau (None)

BlaqueIvy (None)

Cally (None)

Ceci11 (None)

ChrIke (None)

Conway (None)

CptKIRK (None)

DaHileesi (None)

Kerrigan (None)

Loadofcarp (None)

Mage (None)

Meraxes (None)

Muus (None)

Olive00 (None)

Pallavicini (None)

RoseLilly (None)

SeTi1 (None)

Skye (None)

Themis (None)

ABU (B1)

Alex (B1)

AltPhacts (B1)

Altwerkus (B1)

APE308 (B1)

Apizium (B1)

ArigunDD10 (B1)

Ashraf (B1)

AstrumP28 (B1)

AyJay1824 (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

BengaliBalla92 (B1)

Beni05 (B1)

BlackStallion (B1)

BRod943 (B1)

Buckeye (B1)

BullsEye (B1)

Cannibal (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Coffean (B1)

Colbert (B1)

Cold1 (B1)

Cosmolli16 (B1)

Cowgirl (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

Ditto (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

DuffyC (B1)

Durga (B1)

Egahp (B1)

EmmyMG (B1)

EmpTee (B1)

Eremos (B1)

Fang (B1)

Ferhersher (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

Frogger (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Giddykiddy (B1)

Girly (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Horchata (B1)

ImtiyazSitla (B1)

Inkblot (B1)

IPP (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JangoPhett (B1)

Jbone (B1)

Jillium (B1)

Josephine (B1)

Kailash (B1)

Kat63 (B1)

Keitherie (B1)

Kikipoo (B1)

KingTut (B1)

KingVeVeVe (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Legion (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LoveandHonor (B1)

LuckyMarjie (B1)

Lulu100 (B1)

Lulumae (B1)

Mag7 (B1)

Malkin71 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Megatron (B1)

Mesh1 (B1)

Mikota (B1)

Mistert4 (B1)

MitKao (B1)

Morbach (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Novak (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

Pacos19 (B1)

PDRPv (B1)

Pearsonia (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Pickrel13 (B1)

Piglet (B1)

PinkLady16 (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Pops (B1)

Potter (B1)

Prann (B1)

ProfessorX (B1)

Puhltonio (B1)

PuraVida (B1)

Pyro (B1)

RedMaple (B1)

Rfink25 (B1)

Riggan (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

Scooterbug (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Speckles (B1)

Squid (B1)

Squiggle (B1)

Squirt12 (B1)

Steve27 (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Thora (B1)

ThreeOh3D2 (B1)

Tigris (B1)

Timmi (B1)

TomBombadil (B1)

Tre (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

Ulysses2016 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vivamus (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Wunderlich (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Ypsitucky (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Arbiter (B2)

Ares (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Julius (B2)

Kheth (B2)

Laurie (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Rstan (B2)

Sabella (B2)

TA17A (B2)

Tinciduntsolum (B2)

Tres (B2)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

CharlesTrout (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Gulsi (B3)

Heathcliff (B3)

Kamiyu (B3)

Littleengine (B3)

Mortcellus (B3)

NOZO (B3)

OrangeOswald (B3)

Phaedrus (B3)

Phlyer (B3)

Pipefish (B3)

RomaT (B3)

SassBadger (B3)

Yahalom (B3)

Zollars18 (B3)

Adawi (B4)

AlanGrant (B4)

Bane1 (B4)

Bane2 (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Halloween (B4)

JAMaL (B4)

LeapingLizzy (B4)

Nigel (B4)

Paliothales9 (B4)

RawrgerThat (B4)

Skruzzles (B4)

Stinger (B4)

TheRipper (B4)

Tvorc (B4)

Vincenzo (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Plaque NotesAfter 24 hours the plaque diameter size was between .5 and .75 mm. After 48 hours the plaques were about 1.5 mm in diameter. They were clear in the center with halos around the edges.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes99
Has been Phamerated?Yes
Gene List

Click to View

Pipsqueak_1

Pipsqueak_2
(terminase large subunit)

Pipsqueak_3

Pipsqueak_4

Pipsqueak_5

Pipsqueak_6

Pipsqueak_7

Pipsqueak_8
(portal)

Pipsqueak_9
(capsid morphogenesis protein)

Pipsqueak_10
(HNH endonuclease domain protein)

Pipsqueak_11

Pipsqueak_12
(capsid protein)

Pipsqueak_13

Pipsqueak_14

Pipsqueak_15

Pipsqueak_16

Pipsqueak_17

Pipsqueak_18
(major tail protein)

Pipsqueak_19

Pipsqueak_20

Pipsqueak_21

Pipsqueak_22

Pipsqueak_23

Pipsqueak_24

Pipsqueak_25

Pipsqueak_26

Pipsqueak_27

Pipsqueak_28
(tapemeasure)

Pipsqueak_29
(minor tail protein)

Pipsqueak_30
(minor tail protein)

Pipsqueak_31
(minor tail protein)

Pipsqueak_32
(minor tail protein)

Pipsqueak_33
(minor tail protein)

Pipsqueak_34

Pipsqueak_35

Pipsqueak_36

Pipsqueak_37

Pipsqueak_38

Pipsqueak_39

Pipsqueak_40

Pipsqueak_41

Pipsqueak_42

Pipsqueak_43

Pipsqueak_44

Pipsqueak_45

Pipsqueak_46
(HTH DNA binding domain protein)

Pipsqueak_47

Pipsqueak_48
(lysin A)

Pipsqueak_49
(lysin B)

Pipsqueak_50

Pipsqueak_51

Pipsqueak_52
(helicase type III subunit)

Pipsqueak_53

Pipsqueak_54

Pipsqueak_55

Pipsqueak_56

Pipsqueak_57
(RepA)

Pipsqueak_58

Pipsqueak_59
(DNA polymerase I)

Pipsqueak_60

Pipsqueak_61

Pipsqueak_62

Pipsqueak_63

Pipsqueak_64

Pipsqueak_65

Pipsqueak_66

Pipsqueak_67
(RNAseE)

Pipsqueak_68

Pipsqueak_69

Pipsqueak_70
(PLA2-like protein)

Pipsqueak_71

Pipsqueak_72

Pipsqueak_73

Pipsqueak_74

Pipsqueak_75

Pipsqueak_76

Pipsqueak_77

Pipsqueak_78

Pipsqueak_79

Pipsqueak_80

Pipsqueak_81
(HNH endonuclease domain protein)

Pipsqueak_82

Pipsqueak_83

Pipsqueak_84

Pipsqueak_85

Pipsqueak_86

Pipsqueak_87

Pipsqueak_88

Pipsqueak_89

Pipsqueak_90

Pipsqueak_91

Pipsqueak_92

Pipsqueak_93

Pipsqueak_94

Pipsqueak_95

Pipsqueak_96

Pipsqueak_97

Pipsqueak_98

Pipsqueak_99

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKP027208
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload