Mycobacterium phage Corofin
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Detailed Information for Phage Corofin
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAnnmarie Stockinger
Year Found2014
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.443764 N, -80.7017400 Map
Naming NotesThis phage is named after my first horse, Corofin!
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 13, 2014
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage421
Genome length (bp)68685
Character of genome endsCircularly Permuted
GC Content67.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB3
Other Cluster Members

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Alis (None)

Azarath (None)

BigMau (None)

BlaqueIvy (None)

Cally (None)

Camden (None)

Ceci11 (None)

ChrIke (None)

Conway (None)

CptKIRK (None)

DaHileesi (None)

Kerrigan (None)

Loadofcarp (None)

Mage (None)

Meraxes (None)

Muus (None)

Olive00 (None)

Pallavicini (None)

RoseLilly (None)

Skye (None)

Themis (None)

ABU (B1)

Alex (B1)

Altwerkus (B1)

APE308 (B1)

Apizium (B1)

Ashraf (B1)

AstrumP28 (B1)

AyJay1824 (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

BengaliBalla92 (B1)

Beni05 (B1)

BlackStallion (B1)

BRod943 (B1)

Buckeye (B1)

BullsEye (B1)

Cannibal (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Coffean (B1)

Colbert (B1)

Cosmolli16 (B1)

Cowgirl (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

Ditto (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

DuffyC (B1)

Durga (B1)

Egahp (B1)

EmmyMG (B1)

EmpTee (B1)

Eremos (B1)

Fang (B1)

Ferhersher (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

Frogger (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Giddykiddy (B1)

Girly (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Horchata (B1)

ImtiyazSitla (B1)

Inkblot (B1)

IPP (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JangoPhett (B1)

Jbone (B1)

Jillium (B1)

Josephine (B1)

Kailash (B1)

Kat63 (B1)

Keitherie (B1)

Kikipoo (B1)

KingTut (B1)

KingVeVeVe (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Legion (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LoveandHonor (B1)

LuckyMarjie (B1)

Lulu100 (B1)

Lulumae (B1)

Mag7 (B1)

Malkin71 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Megatron (B1)

Mesh1 (B1)

Mikota (B1)

Mistert4 (B1)

MitKao (B1)

Morbach (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Novak (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

Pacos19 (B1)

Pearsonia (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Pickrel13 (B1)

Piglet (B1)

PinkLady16 (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Pops (B1)

Potter (B1)

Prann (B1)

ProfessorX (B1)

Puhltonio (B1)

PuraVida (B1)

Pyro (B1)

RedMaple (B1)

Rfink25 (B1)

Riggan (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

Scooterbug (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Speckles (B1)

Squid (B1)

Squiggle (B1)

Squirt12 (B1)

Steve27 (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Thora (B1)

ThreeOh3D2 (B1)

Tigris (B1)

Timmi (B1)

TomBombadil (B1)

Tre (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

Ulysses2016 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vivamus (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Wunderlich (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Ypsitucky (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Arbiter (B2)

Ares (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Julius (B2)

Kheth (B2)

Laurie (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Rstan (B2)

Sabella (B2)

TA17A (B2)

Tinciduntsolum (B2)

Tres (B2)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

CharlesTrout (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Gulsi (B3)

Heathcliff (B3)

Kamiyu (B3)

Littleengine (B3)

Mortcellus (B3)

NOZO (B3)

OrangeOswald (B3)

Phaedrus (B3)

Phlyer (B3)

Pipefish (B3)

RomaT (B3)

SassBadger (B3)

Yahalom (B3)

Zollars18 (B3)

Adawi (B4)

AlanGrant (B4)

Bane1 (B4)

Bane2 (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Halloween (B4)

JAMaL (B4)

LeapingLizzy (B4)

Nigel (B4)

Paliothales9 (B4)

RawrgerThat (B4)

Skruzzles (B4)

Stinger (B4)

TheRipper (B4)

Tvorc (B4)

Vincenzo (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Plaque NotesThe morphology is sometimes turbid and sometimes clear. This seems to be affected by the time incubated. The picture is indicative of the larger morphology that is clear.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Corofin_1

Corofin_2

Corofin_3

Corofin_4
(PAPS reductase)

Corofin_5

Corofin_6
(terminase large subunit)

Corofin_7

Corofin_8
(RuvC)

Corofin_9

Corofin_10

Corofin_11
(portal)

Corofin_12
(capsid morphogenesis protein)

Corofin_13

Corofin_14
(major capsid protein)

Corofin_15

Corofin_16

Corofin_17

Corofin_18

Corofin_19

Corofin_20

Corofin_21
(major tail subunit)

Corofin_22

Corofin_23

Corofin_24

Corofin_25

Corofin_26

Corofin_27

Corofin_28
(tapemeasure)

Corofin_29
(minor tail protein)

Corofin_30
(minor tail protein)

Corofin_31
(minor tail protein)

Corofin_32
(minor tail protein)

Corofin_33
(minor tail protein)

Corofin_34
(minor tail protein)

Corofin_35
(minor tail protein)

Corofin_36
(minor tail protein)

Corofin_37
(minor tail protein)

Corofin_38
(minor tail protein)

Corofin_39

Corofin_40

Corofin_41

Corofin_42

Corofin_43

Corofin_44
(HTH DNA binding domain)

Corofin_45

Corofin_46
(LysA)

Corofin_47
(LysB)

Corofin_48

Corofin_49

Corofin_50

Corofin_51

Corofin_52
(DNA helicase)

Corofin_53

Corofin_54

Corofin_55

Corofin_56
(RecA)

Corofin_57

Corofin_58
(DNA polymerase I)

Corofin_59

Corofin_60

Corofin_61

Corofin_62

Corofin_63

Corofin_64

Corofin_65

Corofin_66

Corofin_67

Corofin_68

Corofin_69

Corofin_70

Corofin_71
(RNaseE)

Corofin_72

Corofin_73

Corofin_74

Corofin_75

Corofin_76

Corofin_77

Corofin_78

Corofin_79

Corofin_80
(HNH endonuclease)

Corofin_81

Corofin_82

Corofin_83

Corofin_84

Corofin_85

Corofin_86

Corofin_87

Corofin_88

Corofin_89
(RNase (catalytic His protein HICA-like))

Corofin_90

Corofin_91

Corofin_92

Corofin_93

Corofin_94

Corofin_95

Corofin_96

Corofin_97

Corofin_98

Corofin_99

Corofin_100

Corofin_101

Corofin_102

Corofin_103

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKR080205
Refseq NumberNone yet
Published in PaperPope WH et al 2015, Genome Announcements
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload