Mycobacterium phage AlanGrant
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Detailed Information for Phage AlanGrant
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesBumbpo
Found ByMargaret Farrell
Year Found2014
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.441 N, 79.95 W Map
Discovery NotesPhage was not isolated from unenriched sample; first plaques were plated following the first enrichment procedure.
Naming NotesDr. Alan Grant is the paleontologist from the novel and movie Jurassic Park. He is a dynamic character, well-read, innovative, and quick-thinking, and also kicks a raptor in the face.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 17, 2014
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1147
Genome length (bp)72109
Character of genome endsCircularly Permuted
GC Content68.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB4
Other Cluster Members

Click to View

Alis (None)

Azarath (None)

BigMau (None)

BlaqueIvy (None)

Cally (None)

Ceci11 (None)

ChrIke (None)

Conway (None)

CptKIRK (None)

DaHileesi (None)

Kerrigan (None)

Loadofcarp (None)

Mage (None)

Meraxes (None)

Muus (None)

Olive00 (None)

Pallavicini (None)

RoseLilly (None)

SeTi1 (None)

Skye (None)

Themis (None)

ABU (B1)

Alex (B1)

Altwerkus (B1)

APE308 (B1)

Apizium (B1)

ArigunDD10 (B1)

Ashraf (B1)

AstrumP28 (B1)

AyJay1824 (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

BengaliBalla92 (B1)

Beni05 (B1)

BlackStallion (B1)

BRod943 (B1)

Buckeye (B1)

BullsEye (B1)

Cannibal (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Coffean (B1)

Colbert (B1)

Cold1 (B1)

Cosmolli16 (B1)

Cowgirl (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

Ditto (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

DuffyC (B1)

Durga (B1)

Egahp (B1)

EmmyMG (B1)

EmpTee (B1)

Eremos (B1)

Fang (B1)

Ferhersher (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

Frogger (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Giddykiddy (B1)

Girly (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Horchata (B1)

ImtiyazSitla (B1)

Inkblot (B1)

IPP (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JangoPhett (B1)

Jbone (B1)

Jillium (B1)

Josephine (B1)

Kailash (B1)

Kat63 (B1)

Keitherie (B1)

Kikipoo (B1)

KingTut (B1)

KingVeVeVe (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Legion (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LoveandHonor (B1)

LuckyMarjie (B1)

Lulu100 (B1)

Lulumae (B1)

Mag7 (B1)

Malkin71 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Megatron (B1)

Mesh1 (B1)

Mikota (B1)

Mistert4 (B1)

MitKao (B1)

Morbach (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Novak (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

Pacos19 (B1)

PDRPv (B1)

Pearsonia (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Pickrel13 (B1)

Piglet (B1)

PinkLady16 (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Pops (B1)

Potter (B1)

Prann (B1)

ProfessorX (B1)

Puhltonio (B1)

PuraVida (B1)

Pyro (B1)

RedMaple (B1)

Rfink25 (B1)

Riggan (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

Scooterbug (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Speckles (B1)

Squid (B1)

Squiggle (B1)

Squirt12 (B1)

Steve27 (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Thora (B1)

ThreeOh3D2 (B1)

Tigris (B1)

Timmi (B1)

TomBombadil (B1)

Tre (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

Ulysses2016 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vivamus (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Wunderlich (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Ypsitucky (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Arbiter (B2)

Ares (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Julius (B2)

Kheth (B2)

Laurie (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Rstan (B2)

Sabella (B2)

TA17A (B2)

Tinciduntsolum (B2)

Tres (B2)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

CharlesTrout (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Gulsi (B3)

Heathcliff (B3)

Kamiyu (B3)

Littleengine (B3)

Mortcellus (B3)

NOZO (B3)

OrangeOswald (B3)

Phaedrus (B3)

Phlyer (B3)

Pipefish (B3)

RomaT (B3)

SassBadger (B3)

Yahalom (B3)

Zollars18 (B3)

Adawi (B4)

AlanGrant (B4)

Bane1 (B4)

Bane2 (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Halloween (B4)

JAMaL (B4)

LeapingLizzy (B4)

Nigel (B4)

Paliothales9 (B4)

RawrgerThat (B4)

Skruzzles (B4)

Stinger (B4)

TheRipper (B4)

Tvorc (B4)

Vincenzo (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Plaque NotesAlanGrant forms a range of plaque sizes that are consistent through multiple rounds of purification.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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AlanGrant_1

AlanGrant_2
(Tryptophan synthase beta superfamily)

AlanGrant_3

AlanGrant_4
(Terminase small subunit)

AlanGrant_5
(Terminase large subunit (contains intein))

AlanGrant_6

AlanGrant_7

AlanGrant_8
(RuvC)

AlanGrant_9

AlanGrant_10
(portal)

AlanGrant_11
(capsid morphogenesis protein)

AlanGrant_12

AlanGrant_13
(Major capsid)

AlanGrant_14

AlanGrant_15

AlanGrant_16

AlanGrant_17

AlanGrant_18

AlanGrant_19
(Major tail subunit)

AlanGrant_20

AlanGrant_21

AlanGrant_22

AlanGrant_23

AlanGrant_24

AlanGrant_25

AlanGrant_26
(Tapemeasure)

AlanGrant_27
(Minor Tail Protein)

AlanGrant_28
(Minor tail protein)

AlanGrant_29
(Minor Tail Protein)

AlanGrant_30
(Minor Tail Protein)

AlanGrant_31
(Minor Tail Protein)

AlanGrant_32

AlanGrant_33

AlanGrant_34

AlanGrant_35

AlanGrant_36

AlanGrant_37

AlanGrant_38

AlanGrant_39

AlanGrant_40

AlanGrant_41

AlanGrant_42

AlanGrant_43

AlanGrant_44

AlanGrant_45
(LysA)

AlanGrant_46
(LysB)

AlanGrant_47

AlanGrant_48

AlanGrant_49

AlanGrant_50
(Helicase, Type III restriction enzyme subunit)

AlanGrant_51

AlanGrant_52

AlanGrant_53

AlanGrant_54
(Replicative helicase/primase)

AlanGrant_55

AlanGrant_56

AlanGrant_57
(DNA polymerase I)

AlanGrant_58

AlanGrant_59

AlanGrant_60

AlanGrant_61

AlanGrant_62

AlanGrant_63

AlanGrant_64

AlanGrant_65

AlanGrant_66

AlanGrant_67

AlanGrant_68

AlanGrant_69

AlanGrant_70

AlanGrant_71
(RNAse E)

AlanGrant_72

AlanGrant_73

AlanGrant_74

AlanGrant_75

AlanGrant_76

AlanGrant_77

AlanGrant_78

AlanGrant_79
(HNH endonuclease domain)

AlanGrant_80

AlanGrant_81

AlanGrant_82

AlanGrant_83

AlanGrant_84

AlanGrant_85

AlanGrant_86

AlanGrant_87

AlanGrant_88

AlanGrant_89

AlanGrant_90

AlanGrant_91

AlanGrant_92

AlanGrant_93

AlanGrant_94

AlanGrant_95

AlanGrant_96

AlanGrant_97

AlanGrant_98

AlanGrant_99

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKR080200
Refseq NumberNone yet
Published in PaperPope WH et al 2015, Genome Announcements
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload