| Detailed Information for Phage Andies | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Jane Smith |
| Year Found | 2015 |
| Location Found | Longview, TX USA |
| Finding Institution | LeTourneau University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 30°C |
| GPS Coordinates | 32.467869 N, 94.725426 W Map |
| Discovery Notes | Soil was very moist and there was very green grass all around digging area, including a few flowers. There was a tree nearby and it was located about 2 feet away from a sidewalk. Minimum roots when digging from ground. |
| Naming Notes | I worked at this custard shop back home called Andy's and the owners and I knew each other. They were nice enough to bless me with a $6,000 scholarship to come to school at Letourneau University. Without them I wouldn't be here doing this exciting research. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 7, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 5389 |
| Genome length (bp) | 43779 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 13 bases |
| Overhang Sequence | CCCGCCGCAATGG |
| GC Content | 66.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | N |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewAggie Andies BabeRuth Bosection6 Butters Carcharodon Charlie Chewbacca Duplicity Fulbright Gex Hanako Jamie19 Journey Kevin1 Magsby Melville MichelleMyBell Nenae Panchino Parmesanjohn PhancyPhin Philonius Phloss Phrann Pipsqueaks Purgamenstris Raymond7 Rebel Redi Rubeelu Schnauzer Scitech ShrimpFriedEgg Shweta Silvafighter Silvy SkinnyPete Smurph Snekmaggedon SpongeBob Tapioca Xeno Xerxes |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | About 2mm in size and temperate. |
| Morphotype | Siphoviridae |
| Number of Genes | 65 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewAndies_1 Andies_2 Andies_3 Andies_4 Andies_5 Andies_6 Andies_7 Andies_8 Andies_9 Andies_10 Andies_11 Andies_12 Andies_13 Andies_14 Andies_15 Andies_16 Andies_17 Andies_18 Andies_19 Andies_20 Andies_21 Andies_22 Andies_23 Andies_24 Andies_25 Andies_26 Andies_27 Andies_28 Andies_29 Andies_30 Andies_31 Andies_32 Andies_33 Andies_34 Andies_35 Andies_36 Andies_37 Andies_38 Andies_39 Andies_40 Andies_41 Andies_42 Andies_43 Andies_44 Andies_45 Andies_46 Andies_47 Andies_48 Andies_49 Andies_50 Andies_51 Andies_52 Andies_53 Andies_54 Andies_55 Andies_56 Andies_57 Andies_58 Andies_59 Andies_60 Andies_61 Andies_62 Andies_63 Andies_64 Andies_65 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MG099936 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 21 |
| Pitt Freezer Box Grid# | E4 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |