Mycobacterium phage Raymond7
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Detailed Information for Phage Raymond7
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByRayna Smilowitz
Year Found2016
Location FoundHewlett, NY USA
Finding InstitutionLehigh University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates40.637 N, 73.685 W Map
Discovery Notes-retrieved January 14, 2016 at approximately 3:00pm
-Temperature: 38 degrees Fahrenheit- 3.33 degrees Celsius
- 4 inches: approximately 10 cm
- area was moist, rural, rose to trees, 40 ft from a building, not new any foot traffic, flat ground
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 23, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1481
Genome length (bp)42382
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCCGCCGCCTTGG
GC Content66.0%
Sequencing NotesThe sequencing reads indicated that approximately 60% of this population has a 4386-base deletion from position 24006 to 28391, inclusive.
Fasta file available?Yes: Download fasta file
Cluster Life CycleTemperate
Lysogeny NotesThere were some problems in calculating the lysate. I went through a bunch of spot tests and 10 plate/ single plate flooding processes. They were all relatively low in calculation but my DNA calculation was a good number. I stuck with my initial 10 plate lysate which had a concentration of 1.0x10^8 mL.
Other Cluster Members
Annotating InstitutionLehigh University
Annotation StatusIn GenBank
Plaque NotesThe plaques were relatively ranged in sizes from 0.8cm to 0.25cm.
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT498048
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.0x10^8
Date of SEA Lysate Titering Apr 19, 2016
Pitt Freezer Box# 35
Pitt Freezer Box Grid# C7
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload