Mycobacterium phage Snekmaggedon
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Detailed Information for Phage Snekmaggedon
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySong Mi Lee
Year Found2019
Location FoundBoulder, CO United States
Finding InstitutionUniversity of Colorado at Boulder
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature-3°C
GPS Coordinates40.008918 N, 105.268929 E Map
Discovery NotesThe soil sample was obtained from about 12.7 cm below ground level beneath a juniper bush. There were many wood chips in the soil.
Naming NotesThe name for this phage came from my cousin's gaming username.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2160
Genome length (bp)41278
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCGCCGCCTTGG
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Colorado at Boulder
Annotation StatusIn GenBank
Plaque NotesPlaques are turpid or have clear centers with cloudy edges; average diameter of 1.7 mm; temperate phage
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Snekmaggedon_1

Snekmaggedon_2
(terminase)

Snekmaggedon_3

Snekmaggedon_4
(portal protein)

Snekmaggedon_5
(capsid maturation protease)

Snekmaggedon_6
(major capsid protein)

Snekmaggedon_7

Snekmaggedon_8
(head-to-tail adaptor)

Snekmaggedon_9
(head-to-tail stopper)

Snekmaggedon_10

Snekmaggedon_11

Snekmaggedon_12
(tail terminator)

Snekmaggedon_13
(major tail protein)

Snekmaggedon_14
(tail assembly chaperone)

Snekmaggedon_15
(tail assembly chaperone)

Snekmaggedon_16
(tape measure protein)

Snekmaggedon_17
(minor tail protein)

Snekmaggedon_18
(minor tail protein)

Snekmaggedon_19
(minor tail protein)

Snekmaggedon_20
(minor tail protein)

Snekmaggedon_21
(minor tail protein)

Snekmaggedon_22

Snekmaggedon_23

Snekmaggedon_24

Snekmaggedon_25
(lysin A)

Snekmaggedon_26
(holin)

Snekmaggedon_27

Snekmaggedon_28

Snekmaggedon_29

Snekmaggedon_30
(Antitoxin in toxin/antitoxin system, HicB-like)

Snekmaggedon_31

Snekmaggedon_32

Snekmaggedon_33
(integrase)

Snekmaggedon_34
(immunity repressor)

Snekmaggedon_35
(excise)

Snekmaggedon_36

Snekmaggedon_37

Snekmaggedon_38

Snekmaggedon_39

Snekmaggedon_40

Snekmaggedon_41

Snekmaggedon_42

Snekmaggedon_43
(WhiB family transcription factor)

Snekmaggedon_44

Snekmaggedon_45
(RecE-like exonuclease)

Snekmaggedon_46
(RecT-like ss DNA binding protein)

Snekmaggedon_47

Snekmaggedon_48
(RusA-like resolvase)

Snekmaggedon_49
(NrdH-like glutaredoxin)

Snekmaggedon_50

Snekmaggedon_51

Snekmaggedon_52

Snekmaggedon_53

Snekmaggedon_54

Snekmaggedon_55
(G-I-Y Y-I-G nuclease)

Snekmaggedon_56
(helix-turn-helix DNA binding domain protein)

Snekmaggedon_57

Snekmaggedon_58

Snekmaggedon_59

Snekmaggedon_60

Snekmaggedon_61

Snekmaggedon_62

Snekmaggedon_63

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT684588
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
SEA Lysate Titer 5.8 x 10^8 pfu/mL
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload