Mycobacterium phage Carcharodon
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Detailed Information for Phage Carcharodon
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Duplicates of this PhageTaralyn
Found ByAndrew Brannan, Nakia Lewis, Amanda Pitts
Year Found2013
Location FoundJacksonville, AL USA
Finding InstitutionJacksonville State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates33.85425 N, 85.67559 W Map
Discovery NotesSoil collected on Sept. 02, 2013. Approximate depth of 10 cm. Soil was moist (adjacent to small creek) and ambient air temperature was 85 C.
Naming NotesGenus that includes the Great White Shark (Carcharodon carcharias).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 28, 2014
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage116
Sanger Finishing Reactions4
Genome length (bp)43680
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCCGCCGCAATGG
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes71
Has been Phamerated?Yes
Gene List

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Carcharodon_1

Carcharodon_2
(terminase large subunit)

Carcharodon_3

Carcharodon_4
(portal protein)

Carcharodon_5
(capsid maturation protease)

Carcharodon_6
(major capsid protein)

Carcharodon_7

Carcharodon_8
(head-to-tail adaptor)

Carcharodon_9
(head-to-tail stopper)

Carcharodon_10

Carcharodon_11

Carcharodon_12
(tail terminator)

Carcharodon_13
(major tail protein)

Carcharodon_14
(tail assembly chaperone)

Carcharodon_15
(tail assembly chaperone)

Carcharodon_16
(tape measure protein)

Carcharodon_17
(minor tail protein)

Carcharodon_18
(minor tail protein)

Carcharodon_19
(minor tail protein)

Carcharodon_20
(minor tail protein)

Carcharodon_21

Carcharodon_22

Carcharodon_23

Carcharodon_24

Carcharodon_25

Carcharodon_26

Carcharodon_27

Carcharodon_28
(lysin A)

Carcharodon_29
(holin)

Carcharodon_30

Carcharodon_31

Carcharodon_32

Carcharodon_33

Carcharodon_34

Carcharodon_35

Carcharodon_36
(tyrosine integrase)

Carcharodon_37
(immunity repressor)

Carcharodon_38
(excise)

Carcharodon_39

Carcharodon_40

Carcharodon_41

Carcharodon_42

Carcharodon_43

Carcharodon_44

Carcharodon_45
(WhiB family transcription factor)

Carcharodon_46

Carcharodon_47
(Cas4 family exonuclease)

Carcharodon_48
(RecT-like ssDNA binding protein)

Carcharodon_49

Carcharodon_50
(NrdH-like glutaredoxin)

Carcharodon_51

Carcharodon_52

Carcharodon_53

Carcharodon_54

Carcharodon_55

Carcharodon_56

Carcharodon_57

Carcharodon_58

Carcharodon_59

Carcharodon_60

Carcharodon_61
(HNH endonuclease)

Carcharodon_62

Carcharodon_63

Carcharodon_64

Carcharodon_65

Carcharodon_66

Carcharodon_67

Carcharodon_68

Carcharodon_69

Carcharodon_70

Carcharodon_71

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKM588359
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Ignore
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Final DNAMaster FileDownload