Detailed Information for Phage Silvy |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Harleigh Lyle |
Year Found | 2023 |
Location Found | Blacksburg, VA United States |
Finding Institution | Virginia Tech |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 37°C |
GPS Coordinates | 37.243 N, 80.425 W Map |
Discovery Notes | In a roundabout between apartment complexes, underneath a thin layer of mulch. |
Naming Notes | I drive a Chevy Silverado. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 12, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1234 |
Genome length (bp) | 44333 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 13 bases |
Overhang Sequence | CCCGCCGCAATGG |
GC Content | 66.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | N |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Virginia Tech |
Annotation Status | Being Annotated (Expected completion by 5/1/2024) |
Plaque Notes | Plaques are incredibly small but clear. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
169 |
Pitt Freezer Box Grid# |
A8 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |