Detailed Information for Phage Begonia |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Chelsea Hancock |
Year Found | 2017 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 40.440464 N, 79.955696 W Map |
Discovery Notes | Begonia was discovered in a patch of dirt next to a bike rack outside of Clapp Hall, the University of Pittsburgh biology building. There was no nearby vegetation, and on the discovery day, the weather was sunny and about 70 degrees. |
Naming Notes | I have chose the name Begonia after a song by my favorite band, The Grateful Dead. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Nov 28, 2017 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1049 |
Genome length (bp) | 50867 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCGGTGA |
GC Content | 67.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Gettysburg College |
Annotation Status | In GenBank |
Plaque Notes | Begonia produces plaques that range from 0.5 to 1.5 millimeters. Although they range in size, they are all round and completely clear. |
Morphotype | Siphoviridae |
Number of Genes | 78 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MK878896 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
SEA Lysate Titer |
6.6 x 10^10 pfu / mL |
Pitt Freezer Box# |
56 |
Pitt Freezer Box Grid# |
H7 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
GenBank File for Phamerator | Download |