| Detailed Information for Phage Dexdert |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Kyle Timmer |
| Year Found | 2016 |
| Location Found | Grandville, MI USA |
| Finding Institution | Calvin University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 42.896563 N, 85.750597 W Map |
| Discovery Notes | Soil was collected from under a pool deck. The soil was somewhat damp, relatively uniform, and contained some pieces of dead vegetation initially. |
| Naming Notes | The name is a mix of the words "Deck's Dirt," which is where the phage was isolated from (dirt underneath a pool deck) |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | May 1, 2017 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 357 |
| Genome length (bp) | 55006 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DE |
| Subcluster | DE3 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of Louisiana at Monroe |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques started out very cloudy and hard to spot, but as time went on and more purifications were performed, it became more clear. Normal plaque size tended to be around 1-2 millimeters. |
| Morphotype | Siphoviridae |
| Number of Genes | 82 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MW314849 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
1.01*10^9 |
| Date of SEA Lysate Titering |
Nov 30, 2016 |
| Pitt Freezer Box# |
39 |
| Pitt Freezer Box Grid# |
A2 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
