Detailed Information for Phage Guacamole |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Rebecca Rohac |
Year Found | 2015 |
Location Found | Pittsburgh , PA USA |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Unknown |
Isolation Temperature | Not entered |
GPS Coordinates | 40.445396 N, 79.957995 W Map |
Discovery Notes | -Weather conditions during collection: overcast but still humid, 85 degrees fahrenheit -Weather conditions 24hrs prior to collection: less sun and more clouds, highs in the upper 80s and lows in the 70s - Time of collection: 3:00pm, sun was at its peak -Soil Conditions: warm, damp, area, with lots of leaves present - Soil was transported in backpack for about 5-6 hours before being properly stored. Found in lawn across from the Chevron Science Center, in the back lawn of the Space Research Coordination Center |
Naming Notes | The name for this phage was inspired by Chipotle Mexican Grille's delicious guacamole. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Nov 13, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 809 |
Genome length (bp) | 49894 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCGCCGGTGA |
GC Content | 67.2% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Lysogeny Notes | most likely reproduces through the lytic cycle due to its plaque morphology |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Small circles with a clear center |
Number of Genes | 78 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KU963259 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
3 |
Pitt Freezer Box Grid# |
H10 |
Available Files |
Plaque Picture | Download |
Final DNAMaster File | Download |