Gordonia phage JKSyngboy
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Detailed Information for Phage JKSyngboy
Discovery Information
Isolation HostGordonia terrae 3612
Found ByPatrick Keeley
Year Found2019
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.6968 N, 79.6924 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1583
Genome length (bp)58176
Character of genome endsCircularly Permuted
GC Content68.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesClear plaques, ranging from 2-3 mm in size.
Number of Genes82
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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JKSyngboy_1
(terminase small subunit)

JKSyngboy_2
(terminase large subunit)

JKSyngboy_3

JKSyngboy_4
(DNA methylase)

JKSyngboy_5

JKSyngboy_6

JKSyngboy_7

JKSyngboy_8

JKSyngboy_9
(lipoprotein)

JKSyngboy_10

JKSyngboy_11
(portal protein)

JKSyngboy_12

JKSyngboy_13

JKSyngboy_14
(minor capsid protein)

JKSyngboy_15

JKSyngboy_16
(capsid maturation protease)

JKSyngboy_17

JKSyngboy_18

JKSyngboy_19
(major capsid hexamer protein)

JKSyngboy_20

JKSyngboy_21

JKSyngboy_22
(major tail protein)

JKSyngboy_23
(esterase)

JKSyngboy_24
(head-to-tail adaptor)

JKSyngboy_25

JKSyngboy_26

JKSyngboy_27

JKSyngboy_28
(tail assembly chaperone)

JKSyngboy_29

JKSyngboy_30
(tape measure protein)

JKSyngboy_31
(minor tail protein)

JKSyngboy_32
(minor tail protein)

JKSyngboy_33

JKSyngboy_34
(minor tail protein)

JKSyngboy_35

JKSyngboy_36

JKSyngboy_37
(minor tail protein)

JKSyngboy_38

JKSyngboy_39
(lysin A)

JKSyngboy_40
(holin)

JKSyngboy_41

JKSyngboy_42

JKSyngboy_43
(lysin B)

JKSyngboy_44

JKSyngboy_45
(RecE-like exonuclease)

JKSyngboy_46

JKSyngboy_47
(HNH endonuclease)

JKSyngboy_48
(RecT-like DNA pairing protein)

JKSyngboy_49

JKSyngboy_50

JKSyngboy_51
(helix-turn-helix DNA binding domain protein)

JKSyngboy_52

JKSyngboy_53

JKSyngboy_54

JKSyngboy_55

JKSyngboy_56

JKSyngboy_57

JKSyngboy_58

JKSyngboy_59

JKSyngboy_60

JKSyngboy_61

JKSyngboy_62

JKSyngboy_63

JKSyngboy_64

JKSyngboy_65
(RuvC-like resolvase)

JKSyngboy_66

JKSyngboy_67

JKSyngboy_68

JKSyngboy_69

JKSyngboy_70

JKSyngboy_71

JKSyngboy_72

JKSyngboy_73

JKSyngboy_74

JKSyngboy_75

JKSyngboy_76

JKSyngboy_77

JKSyngboy_78

JKSyngboy_79

JKSyngboy_80

JKSyngboy_81
(helix-turn-helix DNA binding domain protein)

JKSyngboy_82
(DNA methylase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT723937
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.4 x 10^12 pfu/uL
Pitt Freezer Box# 114
Pitt Freezer Box Grid# E8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload