| Detailed Information for Phage Nordenberg |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Daniel Velasco |
| Year Found | 2016 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.4437 N, 79.9561 W Map |
| Discovery Notes | The soil sample was collected on February 2nd at 7:55 P.M. It was 44 degrees Fahrenheit at the moment of collection. In the past 24 hours of the collection, the temperature was fairly warm. It was a high of 59 degrees fahrenheit. Since the soil was collected at nighttime, the soil was soft and little cold. However, the warm temperature from the day allowed for the soil to become softer. |
| Naming Notes | The name for this phage came from the fact that the soil was collected right outside a building called Nordenberg Hall. I do not live in the building, but the interior of it is extremely nice and part of me wishes that I was living in it. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 5, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 3348 |
| Genome length (bp) | 57572 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DE |
| Subcluster | DE1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | Turbid plaques. |
| Morphotype | Siphoviridae |
| Number of Genes | 84 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH976514 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
3 |
| Pitt Freezer Box Grid# |
F2 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
