| Detailed Information for Phage Xeno | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Amy Karlberg |
| Year Found | 2014 |
| Location Found | New Haven, CT USA |
| Finding Institution | Southern Connecticut State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 42°C |
| GPS Coordinates | 41.333611 N, 72.9525 W Map |
| Discovery Notes | The area that I collected my phage from is on a foot path and was about one foot away from a murky puddle in the dirt. It was taken from a soil sample with a green fuzzy substance on top. The depth of the sample was 1.5 cm and the temperature outside was 69 degrees F and sunny. It has an average capsid head diameter of 61.5438 nm and a average tail length of 178.2136 nm. Xeno's capsid head standard deviation is 1.50897 nm and the tail length standard deviation is 8.37814 nm. |
| Naming Notes | Xeno is named after Xenophilius Lovegood from Harry Potter. I love Harry Potter, so I wanted to relate my phage to it in some way. Since Xenophilius Lovegood is a bit of an odd character, I thought it was fitting to name my mycobacteriophage after him. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 6, 2015 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 493 |
| Genome length (bp) | 42395 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 13 bases |
| Overhang Sequence | CCCGCCGCCTTGG |
| GC Content | 66.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | N |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Lysogeny Notes | N/A |
| Other Cluster Members |
Click to ViewAggie Andies BabeRuth Bosection6 Butters Carcharodon Charlie Chewbacca Duplicity Fulbright Gex Hanako Jamie19 Journey Kevin1 Magsby Melville MichelleMyBell Nenae Panchino Parmesanjohn PhancyPhin Philonius Phloss Phrann Pipsqueaks Purgamenstris Raymond7 Rebel Redi Rubeelu Schnauzer Scitech ShrimpFriedEgg Shweta Silvafighter Silvy SkinnyPete Smurph Snekmaggedon SpongeBob Tapioca Xeno Xerxes |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Xeno is lytic and has a diameter of 2 mm. |
| Morphotype | Siphoviridae |
| Number of Genes | 69 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewXeno_1 Xeno_2 Xeno_3 Xeno_4 Xeno_5 Xeno_6 Xeno_7 Xeno_8 Xeno_9 Xeno_10 Xeno_11 Xeno_12 Xeno_13 Xeno_14 Xeno_15 Xeno_16 Xeno_17 Xeno_18 Xeno_19 Xeno_20 Xeno_21 Xeno_22 Xeno_23 Xeno_24 Xeno_25 Xeno_26 Xeno_27 Xeno_28 Xeno_29 Xeno_30 Xeno_31 Xeno_32 Xeno_33 Xeno_34 Xeno_35 Xeno_36 Xeno_37 Xeno_38 Xeno_39 Xeno_40 Xeno_41 Xeno_42 Xeno_43 Xeno_44 Xeno_45 Xeno_46 Xeno_47 Xeno_48 Xeno_49 Xeno_50 Xeno_51 Xeno_52 Xeno_53 Xeno_54 Xeno_55 Xeno_56 Xeno_57 Xeno_58 Xeno_59 Xeno_60 Xeno_61 Xeno_62 Xeno_63 Xeno_64 Xeno_65 Xeno_66 Xeno_67 Xeno_68 Xeno_69 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KU935728 |
| Refseq Number | NC_031243 |
| Archiving Info | |
| Archiving status | Archived |
| SEA Designator | 2014SCSUxenoAK |
| SEA Lysate Titer | 4.6x 10^10 |
| Date of SEA Lysate Titering | Oct 13, 2014 |
| Pitt Freezer Box# | 10 |
| Pitt Freezer Box Grid# | C3 |
| Available Files | |
| EM Picture | Download |
| Final DNAMaster File | Download |