| Detailed Information for Phage Yami |
| Discovery Information |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Ethan Caro |
| Year Found | 2023 |
| Location Found | Harlingen, TX United States |
| Finding Institution | South Texas College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 28°C |
| GPS Coordinates | 26.21489 N, 97.77299 W Map |
| Discovery Notes | The soil sample was taken from my
backyard from a spot with a lot of rocks and dead foliage. |
| Naming Notes | The name comes from my cousin’s name,
Yamilet, who I love dearly. She is very smart and helped me get into this program, and so I wanted to honor her by naming my
phage after her. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 9, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 4766 |
| Genome length (bp) | 16924 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CCCGCCCCA |
| GC Content | 68.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | EE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | South Texas College |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 25 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PQ184787 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
3.1 x 10^9 |
| Pitt Freezer Box# |
188 |
| Pitt Freezer Box Grid# |
A12 |
| Available Files |
| GenBank File for Phamerator | Download |