Microbacterium phage Yami
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Detailed Information for Phage Yami | |
Discovery Information | |
Isolation Host | Microbacterium foliorum NRRL B-24224 |
Found By | Ethan Caro |
Year Found | 2023 |
Location Found | Harlingen, TX United States |
Finding Institution | South Texas College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 28°C |
GPS Coordinates | 26.21489 N, 97.77299 W Map |
Discovery Notes | The soil sample was taken from my backyard from a spot with a lot of rocks and dead foliage. |
Naming Notes | The name comes from my cousin’s name, Yamilet, who I love dearly. She is very smart and helped me get into this program, and so I wanted to honor her by naming my phage after her. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 9, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 4766 |
Genome length (bp) | 16924 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CCCGCCCCA |
GC Content | 68.8% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | EE |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members | |
Annotating Institution | South Texas College |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Number of Genes | 25 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List | |
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | PQ184787 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
SEA Lysate Titer | 3.1 x 10^9 |
Pitt Freezer Box# | 188 |
Pitt Freezer Box Grid# | A12 |
Available Files | |
GenBank File for Phamerator | Download |