| Detailed Information for Phage Upsilon | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Kevin Szafran |
| Year Found | 2021 |
| Location Found | Dade City, FL USA |
| Finding Institution | Saint Leo University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 28.34444 N, 82.234299 W Map |
| Discovery Notes | The phage was discovered in a damp soil sample underneath a flowerbed in an apartment complex a day after heavy rainfall. The soil was very dark grey/black in color and contained a mixture of fertilizer beads. The sample was collected approximately 3 cm below ground level. |
| Naming Notes | The page name was inspired by the name of my fraternity chapter. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 24, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 5172 |
| Genome length (bp) | 17510 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CCCGCCCCA |
| GC Content | 69.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAlucard Anseraureola Aries55 Azizam Aztec BarBear Belthelas BinkBonk BonaeVitae BoomRoasted Bradley2 Bri160 BrokMonster Bullzi2019 Burgy BurtonThePup Cheesecake Ciel Clownery Concrete Danno Dongwon EdElric Efeko Eightball Erin Gardevoir Gillker HarperAnne Hernandez44 Hulk Jahseh Jannah Jerky JoBros Josuke JRok Kaijohn KayPaulus KyriosFaba LaviMo Leafy Livingwater Loca Lola20 Lunatic Luxx Majesty ManAs McShie MelBee03 Miaurora Minima MirimarMandM MrGreen Naby Namsahir NeumannU Nobel Noelani Octopus Otwor Owens PaoPu Pondwater PoRanda Publix Quaker Rhysand Sara Scamander Scrunchy SeaWolves Sippinontea Slentz TeddyBoy TimoTea TinyTruffula TomBrady12 Trireme Upsilon Vanisius VitulaEligans Witch Wolfpack Yasuo YertPhresh Yubaba |
| Annotating Institution | Saint Leo University |
| Annotation Status | Overdue (Expected completion by 5/16/2022) |
| Plaque Notes | Plaques were 2 mm in diameter, clear, and circular with a small opaque halo surrounding them. |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewUpsilon_Draft_1 Upsilon_Draft_2 Upsilon_Draft_3 Upsilon_Draft_4 Upsilon_Draft_5 Upsilon_Draft_6 Upsilon_Draft_7 Upsilon_Draft_8 Upsilon_Draft_9 Upsilon_Draft_10 Upsilon_Draft_11 Upsilon_Draft_13 Upsilon_Draft_14 Upsilon_Draft_15 Upsilon_Draft_16 Upsilon_Draft_17 Upsilon_Draft_18 Upsilon_Draft_19 Upsilon_Draft_20 Upsilon_Draft_21 Upsilon_Draft_22 Upsilon_Draft_23 Upsilon_Draft_24 Upsilon_Draft_25 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |