| Detailed Information for Phage Upsilon |
| Discovery Information |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Kevin Szafran |
| Year Found | 2021 |
| Location Found | Dade City, FL USA |
| Finding Institution | Saint Leo University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 28.34444 N, 82.234299 W Map |
| Discovery Notes | The phage was discovered in a damp soil sample underneath a flowerbed in an apartment complex a day after heavy rainfall. The soil was very dark grey/black in color and contained a mixture of fertilizer beads. The sample was collected approximately 3 cm below ground level. |
| Naming Notes | The page name was inspired by the name of my fraternity chapter. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 24, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 5172 |
| Genome length (bp) | 17510 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CCCGCCCCA |
| GC Content | 69.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | EE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Saint Leo University |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques were 2 mm in diameter, clear, and circular with a small opaque halo surrounding them. |
| Number of Genes | 25 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | ON970613 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
146 |
| Pitt Freezer Box Grid# |
E9 |
| Available Files |
| GenBank File for Phamerator | Download |