| Detailed Information for Phage Bubble | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Jadyn Ancosky |
| Year Found | 2025 |
| Location Found | Pittsburgh, PA United States |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.433296 N, 79.956337 W Map |
| Discovery Notes | Our group members and Jadyn Ancosky, Sarah Caruso, and Joanna Fan. During spring semester 2025, this sample was collected from under a large tree. The surrounding environment was grass. The texture was wet and powdery. |
| Naming Notes | We named our bacteriophage "bubble" because the plaques from the phage activity look like bubbles. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 6, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NextSeq 1000 |
| Read Type | Paired-end reads |
| Read Length | 300 bp |
| Approximate Shotgun Coverage | 6504 |
| Genome length (bp) | 46528 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 13 bases |
| Overhang Sequence | CGGTAGGCTT |
| GC Content | 60.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira Balloona Bavilard BigChungus BillDoor Biskit Blondies Bubble Burnsey Button Buttrmlkdreams CanesSauce CaramelLatte Carsonalex CherryonLim ChickenTender ChocoMunchkin Cleo CocoaPuff Cozz Dre3 Elinal Eliott ElJefes Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Socotra Sopespian Starburst SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Wolfwood Yakult Yarn Yucky Yummy Zareef |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Being Annotated (Expected completion by 12/31/2025) |
| Number of Genes | 69 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBubble_1 Bubble_2 Bubble_3 Bubble_4 Bubble_5 Bubble_6 Bubble_7 Bubble_8 Bubble_9 Bubble_10 Bubble_11 Bubble_12 Bubble_13 Bubble_14 Bubble_15 Bubble_16 Bubble_17 Bubble_18 Bubble_19 Bubble_20 Bubble_21 Bubble_22 Bubble_23 Bubble_24 Bubble_25 Bubble_26 Bubble_27 Bubble_28 Bubble_29 Bubble_30 Bubble_31 Bubble_32 Bubble_33 Bubble_34 Bubble_35 Bubble_36 Bubble_37 Bubble_38 Bubble_39 Bubble_40 Bubble_41 Bubble_42 Bubble_43 Bubble_44 Bubble_45 Bubble_46 Bubble_47 Bubble_48 Bubble_49 Bubble_50 Bubble_51 Bubble_52 Bubble_53 Bubble_54 Bubble_55 Bubble_56 Bubble_57 Bubble_58 Bubble_59 Bubble_60 Bubble_61 Bubble_62 Bubble_63 Bubble_64 Bubble_65 Bubble_66 Bubble_67 Bubble_68 Bubble_69 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 216 |
| Pitt Freezer Box Grid# | C4 |