Gordonia phage Yakult
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Detailed Information for Phage Yakult
Discovery Information
Isolation HostGordonia terrae 3612
Found ByBeatrice Milnes
Year Found2018
Location FoundFarmington, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates39.849015 N, 79.657618 W Map
Discovery NotesThis soil was taken from a grassy bed nearby a parking lot at the Summit Inn Resort in Farmington, PA. The soil was initially covered in grass and roots but after their removal it was very moist and pliable. The temperature outside was 71 degrees fahrenheit with bright, sunny and slightly cloudy skies.
Naming NotesYakult is a fermented probiotic sweet milk drink which originated in Japan.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage453
Genome length (bp)47197
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCAT
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Lysogeny NotesYakult is unable to produce a lysogen.
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesYakult's plaques are approximately 1/4 mm in diameter, with undefined edges. Plaque Morphology has been consistent through multiple serial dilutions throughout the course of the Fall 2018 semester.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Yakult_1
(terminase small subunit)

Yakult_2

Yakult_3

Yakult_4

Yakult_5
(terminase large subunit)

Yakult_6
(portal protein)

Yakult_7
(capsid maturation protease and MuF-like fusion protein)

Yakult_8
(scaffolding protein)

Yakult_9
(major capsid protein)

Yakult_10
(head-to-tail adaptor)

Yakult_11
(head-to-tail stopper)

Yakult_12

Yakult_13
(tail terminator)

Yakult_14
(major tail protein)

Yakult_15
(tail assembly chaperone)

Yakult_16
(tail assembly chaperone)

Yakult_17
(tape measure protein)

Yakult_18
(minor tail protein)

Yakult_19
(minor tail protein)

Yakult_20
(minor tail protein)

Yakult_21
(lysin A, L-Ala-D-Glu peptidase domain)

Yakult_22
(lysin A, glycosyl hydrolase domain)

Yakult_23
(membrane protein)

Yakult_24
(membrane protein)

Yakult_25
(membrane protein)

Yakult_26

Yakult_27

Yakult_28

Yakult_29

Yakult_30
(minor tail protein)

Yakult_31

Yakult_32

Yakult_33
(helix-turn-helix DNA binding domain protein)

Yakult_34

Yakult_35

Yakult_36
(SprT-like protease)

Yakult_37
(helix-turn-helix DNA binding domain protein)

Yakult_38
(MerR-like helix-turn-helix DNA binding domain protein)

Yakult_39
(membrane protein)

Yakult_40

Yakult_41

Yakult_42
(RecA-like DNA recombinase)

Yakult_43
(exonuclease)

Yakult_44

Yakult_45
(DNA methylase)

Yakult_46
(DNA polymerase I)

Yakult_47
(deoxycytidylate deaminase)

Yakult_48
(lysin B)

Yakult_49
(thymidylate synthase)

Yakult_50

Yakult_51

Yakult_52

Yakult_53
(nucleotide pyrophosphohydrolase)

Yakult_54
(thymidylate kinase)

Yakult_55
(helicase)

Yakult_56

Yakult_57

Yakult_58

Yakult_59
(RecA-like DNA recombinase)

Yakult_60

Yakult_61

Yakult_62

Yakult_63

Yakult_64

Yakult_65

Yakult_66
(membrane protein)

Yakult_67

Yakult_68

Yakult_69

Yakult_70

Yakult_71

Yakult_72

Yakult_73

Yakult_74
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK875791
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 91
Pitt Freezer Box Grid# D10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload