Gordonia phage Yakult
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Detailed Information for Phage Yakult
Discovery Information
Isolation HostGordonia terrae 3612
Found ByBeatrice Milnes
Year Found2018
Location FoundFarmington, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates39.849015 N, 79.657618 W Map
Discovery NotesThis soil was taken from a grassy bed nearby a parking lot at the Summit Inn Resort in Farmington, PA. The soil was initially covered in grass and roots but after their removal it was very moist and pliable. The temperature outside was 71 degrees fahrenheit with bright, sunny and slightly cloudy skies.
Naming NotesYakult is a fermented probiotic sweet milk drink which originated in Japan.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage453
Genome length (bp)47197
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCAT
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Lysogeny NotesYakult is unable to produce a lysogen.
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesYakult's plaques are approximately 1/4 mm in diameter, with undefined edges. Plaque Morphology has been consistent through multiple serial dilutions throughout the course of the Fall 2018 semester.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK875791
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 91
Pitt Freezer Box Grid# D10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload