Gordonia phage Sopespian
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Detailed Information for Phage Sopespian
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByJessica Stockert
Year Found2020
Location FoundAberdeen, SD Brown
Finding InstitutionNorthern State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates45.69067 N, 98.302521 W Map
Discovery NotesThis virus was isolated from an environmental sample taken from the edge of Sand Lake including wrack water, some silt and sludge plus a few snails. August 23rd late in the evening.
Naming NotesThis virus was named after this character in the Chronicles of Narnia: Prince Caspian because this virus reminds me of the Telmarine lord who aided in the conquering of Narnia. During the novel, lord Sopespian kills his king to take over the kingdom.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 19, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage699
Genome length (bp)46086
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCTT
GC Content60.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionNorthern State University
Annotation StatusBeing Annotated (Expected completion by 5/1/2021)
Plaque NotesMore lysogenic (blurry) than lytic on G. rubripertincta. 0.5 -1 mm in diameter; rarely larger than that.
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives