Gordonia phage Agatha
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Detailed Information for Phage Agatha
Discovery Information
Isolation HostGordonia terrae 3612
Found ByIsabel Sunday Mills
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.44694 N, 79.95167 W Map
Discovery Notes930 ft. above sea level
Naming NotesWes Anderson's 'Grand Budapest Hotel'
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 11, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2001
Genome length (bp)46543
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCTT
GC Content60.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesSmall, <1 mm diameter cloudy clearings
Has been Phamerated?Yes
Gene List

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Agatha_1
(terminase small subunit)

Agatha_2

Agatha_3

Agatha_4
(terminase large subunit)

Agatha_5
(portal protein)

Agatha_6
(capsid maturation protease and MuF-like fusion protein)

Agatha_7
(scaffolding protein)

Agatha_8
(major capsid protein)

Agatha_9
(head-to-tail adaptor)

Agatha_10
(head-to-tail stopper)

Agatha_11

Agatha_12
(tail terminator)

Agatha_13
(major tail protein)

Agatha_14
(tail assembly chaperone)

Agatha_15
(tail assembly chaperone)

Agatha_16
(tape measure protein)

Agatha_17
(minor tail protein)

Agatha_18
(minor tail protein)

Agatha_19

Agatha_20
(lysin A, L-Ala-D-Glu peptidase domain)

Agatha_21
(lysin A, glycosyl hydrolase domain)

Agatha_22
(membrane protein)

Agatha_23
(membrane protein)

Agatha_24
(membrane protein)

Agatha_25

Agatha_26

Agatha_27

Agatha_28

Agatha_29

Agatha_30

Agatha_31
(helix-turn-helix DNA binding domain protein)

Agatha_32
(MerR-like helix-turn-helix DNA binding domain protein)

Agatha_33
(membrane protein)

Agatha_34

Agatha_35
(holliday junction resolvase)

Agatha_36
(peptidase)

Agatha_37

Agatha_38

Agatha_39
(RecA-like DNA recombinase)

Agatha_40

Agatha_41
(Cas4 family exonuclease)

Agatha_42

Agatha_43
(DNA polymerase I)

Agatha_44
(deoxycytidylate deaminase)

Agatha_45
(lysin B)

Agatha_46

Agatha_47
(thymidylate synthase)

Agatha_48

Agatha_49

Agatha_50
(nucleotide pyrophosphohydrolase)

Agatha_51
(thymidylate kinase)

Agatha_52
(lipoprotein)

Agatha_53
(DNA helicase)

Agatha_54

Agatha_55

Agatha_56

Agatha_57

Agatha_58
(RecA-like DNA recombinase)

Agatha_59

Agatha_60

Agatha_61

Agatha_62

Agatha_63

Agatha_64

Agatha_65

Agatha_66

Agatha_67

Agatha_68

Agatha_69

Agatha_70

Agatha_71
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK875795
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 178 ng/uL
Pitt Freezer Box# 55
Pitt Freezer Box Grid# B10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload