Gordonia phage SteamedHams
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Detailed Information for Phage SteamedHams
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByJohn Perkins
Year Found2018
Location FoundAlexandria, VA USA
Finding InstitutionGeorge Mason University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature20°C
GPS Coordinates38.793993 N, 77.043856 W Map
Discovery NotesSoil sample was taken from a forest floor near a community garden in Jones Point Park, located on the southern tip of Old Town Alexandria. Soil was damp and conditions generally cooler than average due to recent rainfall. Sample was taken in the afternoon at 17:11.
Naming NotesNamed after an Albany expression I learned during an unforgettable luncheon.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 14, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2138
Genome length (bp)44571
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCTT
GC Content59.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionGeorge Mason University
Annotation StatusIn GenBank
Plaque NotesSteamedHams produced very small and clear plaques
Has been Phamerated?Yes
Gene List

Click to View

SteamedHams_1
(terminase, small subunit)

SteamedHams_2

SteamedHams_3

SteamedHams_4
(membrane protein)

SteamedHams_5

SteamedHams_6
(terminase, large subunit)

SteamedHams_7
(portal protein)

SteamedHams_8
(capsid maturation protease)

SteamedHams_9
(scaffolding protein)

SteamedHams_10
(major capsid protein)

SteamedHams_11
(head-to-tail adaptor)

SteamedHams_12
(head-to-tail stopper)

SteamedHams_13

SteamedHams_14
(tail terminator)

SteamedHams_15
(major tail protein)

SteamedHams_16
(tail assembly chaperone)

SteamedHams_17
(tail assembly chaperone)

SteamedHams_18
(tape measure protein)

SteamedHams_19
(minor tail protein)

SteamedHams_20
(minor tail protein)

SteamedHams_21
(minor tail protein)

SteamedHams_22
(lysin A, L-Ala-D-Glu peptidase domain)

SteamedHams_23
(lysin A, glycosyl hydrolase domain)

SteamedHams_24
(holin)

SteamedHams_25
(membrane protein)

SteamedHams_26
(membrane protein)

SteamedHams_27
(minor tail protein)

SteamedHams_28
(minor tail protein)

SteamedHams_29
(minor tail protein)

SteamedHams_30
(minor tail protein)

SteamedHams_31

SteamedHams_32

SteamedHams_33
(helix-turn-helix DNA binding domain)

SteamedHams_34

SteamedHams_35

SteamedHams_36
(helix-turn-helix DNA binding domain, MerR-like)

SteamedHams_37
(membrane protein)

SteamedHams_38
(nuclease)

SteamedHams_39

SteamedHams_40

SteamedHams_41
(RecA-like DNA recombinase)

SteamedHams_42
(RecB-like exonuclease/helicase)

SteamedHams_43
(DNA Polymerase I)

SteamedHams_44
(deoxycytidylate deaminase)

SteamedHams_45
(lysin B)

SteamedHams_46

SteamedHams_47
(ThyX-like thymidylate synthase)

SteamedHams_48

SteamedHams_49

SteamedHams_50

SteamedHams_51
(MazG-like nucleotide pyrophosphohydrolase)

SteamedHams_52
(thymidylate kinase)

SteamedHams_53

SteamedHams_54
(helicase)

SteamedHams_55

SteamedHams_56

SteamedHams_57

SteamedHams_58

SteamedHams_59
(DNA primase/helicase)

SteamedHams_60

SteamedHams_61

SteamedHams_62

SteamedHams_63

SteamedHams_64

SteamedHams_65

SteamedHams_66

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234215
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.1e10
Pitt Freezer Box# 89
Pitt Freezer Box Grid# B5
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload