| Detailed Information for Phage Vine | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Grant Schneider, Maggie Osborne, Chanasei Ziemann |
| Year Found | 2020 |
| Location Found | Lincoln, NE United States of America |
| Finding Institution | University of Nebraska-Lincoln |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.8203 N, 96.6967 W Map |
| Discovery Notes | The soil was moist and was a combination of dirt and mulch. It was found under a tree. Soil sample provided by Grant Schneider |
| Naming Notes | The phage was found on Vine Street which is why we chose the name 'Vine' |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 25, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 202 |
| Genome length (bp) | 48092 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCTT |
| GC Content | 60.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of Nebraska-Lincoln |
| Annotation Status | Awaiting_QC |
| Plaque Notes | Circular, pinhead-sized plaques. About 1mm in diameter |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewVine_Draft_1 Vine_Draft_2 Vine_Draft_3 Vine_Draft_4 Vine_Draft_5 Vine_Draft_6 Vine_Draft_7 Vine_Draft_8 Vine_Draft_9 Vine_Draft_10 Vine_Draft_11 Vine_Draft_12 Vine_Draft_13 Vine_Draft_14 Vine_Draft_15 Vine_Draft_16 Vine_Draft_17 Vine_Draft_18 Vine_Draft_19 Vine_Draft_20 Vine_Draft_21 Vine_Draft_22 Vine_Draft_23 Vine_Draft_24 Vine_Draft_25 Vine_Draft_26 Vine_Draft_27 Vine_Draft_28 Vine_Draft_29 Vine_Draft_30 Vine_Draft_31 Vine_Draft_32 Vine_Draft_33 Vine_Draft_34 Vine_Draft_35 Vine_Draft_36 Vine_Draft_37 Vine_Draft_38 Vine_Draft_39 Vine_Draft_40 Vine_Draft_41 Vine_Draft_42 Vine_Draft_43 Vine_Draft_44 Vine_Draft_45 Vine_Draft_46 Vine_Draft_47 Vine_Draft_48 Vine_Draft_49 Vine_Draft_50 Vine_Draft_51 Vine_Draft_52 Vine_Draft_53 Vine_Draft_54 Vine_Draft_55 Vine_Draft_56 Vine_Draft_57 Vine_Draft_58 Vine_Draft_59 Vine_Draft_60 Vine_Draft_61 Vine_Draft_62 Vine_Draft_63 Vine_Draft_64 Vine_Draft_65 Vine_Draft_66 Vine_Draft_67 Vine_Draft_68 Vine_Draft_69 Vine_Draft_70 Vine_Draft_71 Vine_Draft_72 Vine_Draft_73 Vine_Draft_74 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 121 |
| Pitt Freezer Box Grid# | A9 |