Gordonia phage Vine
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Detailed Information for Phage Vine
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByGrant Schneider, Maggie Osborne, Chanasei Ziemann
Year Found2020
Location FoundLincoln, NE United States of America
Finding InstitutionUniversity of Nebraska-Lincoln
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.8203 N, 96.6967 W Map
Discovery NotesThe soil was moist and was a combination of dirt and mulch. It was found under a tree. Soil sample provided by Grant Schneider
Naming NotesThe phage was found on Vine Street which is why we chose the name 'Vine'
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 25, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage202
Genome length (bp)48092
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCTT
GC Content60.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Nebraska-Lincoln
Annotation StatusAwaiting_QC
Plaque NotesCircular, pinhead-sized plaques. About 1mm in diameter
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 121
Pitt Freezer Box Grid# A9