Detailed Information for Phage Horseradish |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Grace Hodgkin and Whitney St. Pierre |
Year Found | 2022 |
Location Found | Old Town, ME United States of America |
Finding Institution | University of Maine, Honors College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 21°C |
GPS Coordinates | 44.928847 N, 68.67177 W Map |
Discovery Notes | From composted soil from Roger's Farm in Orono, Maine; collected by Tom Molloy. |
Naming Notes | We wanted to name it after a vegetable since it came from a compost sample from a farm. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 3, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 201 |
Genome length (bp) | 45764 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTAGGCTT |
GC Content | 60.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CT |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Lysogeny Notes | This phage produces no lysogens. |
Other Cluster Members |
|
Annotating Institution | University of Maine, Honors College |
Annotation Status | In GenBank |
Plaque Notes | 3.5 mm diameter, clear plaques- consistent with lytic phages |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | OR159672 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
163 |
Pitt Freezer Box Grid# |
D9 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |