Gordonia phage Survivors
Survivors Plaque Picture
Survivors EM Picture
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Survivors
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByJimmy Vo
Year Found2021
Location FoundJeffersonville, IN United States
Finding InstitutionIndiana University Southeast
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature26°C
GPS Coordinates38.314609 N, 85.693118 W Map
Discovery NotesThe soil sample was found in front of my house next to a bush and where I put my trash. I picked a spot with little grass and needed a shovel due to how tough and dry the soil was. Once in a bag, it was mushy, moist, and soft.
Naming NotesThe bacteriophage was named Survivor because the spot test used after Enriched Isolation was contaminated. There was also a large spot of contamination next to the sample.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage735
Genome length (bp)45436
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCAT
GC Content61.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionIndiana University Southeast
Annotation StatusIn GenBank
Plaque NotesWhen there is a little number of plaques on the plaque assay, they have spread far apart and are hard to see. The morphology is cloudy with no clear or consistent shape like a small dot. The diameter is half a millimeter. However, when highly concentrated the plaques are clumped together in one area and are clear. The plaques are dark with a perfectly round shape.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Survivors_1

Survivors_2
(terminase, small subunit)

Survivors_3

Survivors_4

Survivors_5

Survivors_6
(terminase, large subunit)

Survivors_7
(portal protein)

Survivors_8

Survivors_9
(scaffolding protein)

Survivors_10
(major capsid protein)

Survivors_11
(head-to-tail adaptor)

Survivors_12
(head-to-tail stopper)

Survivors_13

Survivors_14
(tail terminator)

Survivors_15
(major tail protein)

Survivors_16
(tail assembly chaperone)

Survivors_17
(tail assembly chaperone)

Survivors_18
(tape measure protein)

Survivors_19
(minor tail protein)

Survivors_20
(minor tail protein)

Survivors_21
(minor tail protein)

Survivors_22
(lysin A, L-Ala-D-Glu peptidase domain)

Survivors_23
(lysin A, glycosyl hydrolase domain)

Survivors_24

Survivors_25

Survivors_26

Survivors_27

Survivors_28

Survivors_29
(minor tail protein)

Survivors_30

Survivors_31

Survivors_32

Survivors_33

Survivors_34
(helix-turn-helix DNA binding protein, MerR-like)

Survivors_35

Survivors_36
(Holliday junction resolvase)

Survivors_37

Survivors_38
(AAA-ATPase)

Survivors_39
(Cas4 family exonuclease)

Survivors_40
(DNA polymerase I)

Survivors_41
(deoxycytidylate deaminase)

Survivors_42
(lysin B)

Survivors_43
(thymidylate synthase)

Survivors_44

Survivors_45

Survivors_46
(dUTPase)

Survivors_47
(thymidylate kinase)

Survivors_48

Survivors_49
(DNA helicase)

Survivors_50

Survivors_51

Survivors_52

Survivors_53
(DNA primase/helicase)

Survivors_54

Survivors_55

Survivors_56

Survivors_57

Survivors_58

Survivors_59

Survivors_60

Survivors_61

Survivors_62

Survivors_63

Survivors_64

Survivors_65

Survivors_66

Survivors_67

Survivors_68

Survivors_69
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON970576
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 139
Pitt Freezer Box Grid# F3
Available Files
GenBank File for PhameratorDownload