Gordonia phage CherryonLim
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Detailed Information for Phage CherryonLim
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByDiana Lim
Year Found2019
Location FoundRiverside, CA USA
Finding InstitutionLa Sierra University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature12°C
GPS Coordinates33.9094 N, 117.4987 W Map
Discovery Notessoil description: Very wet, dark brown, full of organic matter
Naming NotesCherryonLim
When seen through the Electron Microscopy, most of my phages seem to all come in pairs. The way the phages looked reminded me of a cherry, and a metaphor, "cherry on top." A "cherry on top" means metaphorically something tiny and special is added at the end to make it more enriched. I wanted my phage to be that "cherry on top." "Lim" is my last name and I replaced "top" with it tribute to my family.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 8, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1468
Genome length (bp)48948
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCGGCGGTAGGCTT
GC Content60.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionLa Sierra University
Annotation StatusIn GenBank
Plaque Notesclear plaque, lytic; round, small, less than 1mm
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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CherryonLim_1
(terminase, small subunit)

CherryonLim_2
(endonuclease VII)

CherryonLim_3

CherryonLim_4

CherryonLim_5
(terminase, large subunit)

CherryonLim_6
(portal protein)

CherryonLim_7
(capsid maturation protease)

CherryonLim_8
(scaffolding protein)

CherryonLim_9
(major capsid protein)

CherryonLim_10
(head-to-tail adaptor)

CherryonLim_11
(head-to-tail stopper)

CherryonLim_12

CherryonLim_13
(tail terminator)

CherryonLim_14
(major tail protein)

CherryonLim_15
(tail assembly chaperone)

CherryonLim_16
(tail assembly chaperone)

CherryonLim_17
(tape measure protein)

CherryonLim_18
(minor tail protein)

CherryonLim_19
(minor tail protein)

CherryonLim_20
(minor tail protein)

CherryonLim_21
(lysin A, L-Ala-D-Glu peptidase domain)

CherryonLim_22
(lysin A, glycosyl hydrolase domain)

CherryonLim_23
(holin)

CherryonLim_24
(membrane protein)

CherryonLim_25
(membrane protein)

CherryonLim_26

CherryonLim_27

CherryonLim_28

CherryonLim_29

CherryonLim_30

CherryonLim_31

CherryonLim_32

CherryonLim_33

CherryonLim_34

CherryonLim_35

CherryonLim_36

CherryonLim_37
(SprT-like protease)

CherryonLim_38
(helix-turn-helix DNA binding domain)

CherryonLim_39
(helix-turn-helix DNA binding domain, MerR-like)

CherryonLim_40
(exonuclease)

CherryonLim_41
(membrane protein)

CherryonLim_42

CherryonLim_43
(RecA-like DNA Recombinase)

CherryonLim_44
(RecB-like Exonuclease/helicase)

CherryonLim_45
(helix-turn-helix DNA binding domain)

CherryonLim_46
(DNA polymerase I)

CherryonLim_47
(deoxycytidylate deaminase)

CherryonLim_48
(lysin b)

CherryonLim_49

CherryonLim_50
(thymidylate synthase)

CherryonLim_51

CherryonLim_52

CherryonLim_53

CherryonLim_54

CherryonLim_55
(MazG-like nucleotide pyrophosphohydrolase)

CherryonLim_56
(ATP binding cassette-like protein)

CherryonLim_57
(DNA helicase)

CherryonLim_58

CherryonLim_59

CherryonLim_60

CherryonLim_61

CherryonLim_62
(RecA-like DNA Recombinase)

CherryonLim_63

CherryonLim_64

CherryonLim_65

CherryonLim_66

CherryonLim_67

CherryonLim_68

CherryonLim_69

CherryonLim_70

CherryonLim_71

CherryonLim_72

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN284906
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 92
Pitt Freezer Box Grid# H2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload