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Gordonia phage CherryonLim
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Detailed Information for Phage CherryonLim
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByDiana Lim
Year Found2019
Location FoundRiverside, CA USA
Finding InstitutionLa Sierra University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature12°C
GPS Coordinates33.9094 N, 117.4987 W Map
Discovery Notessoil description: Very wet, dark brown, full of organic matter
Naming NotesCherryonLim
When seen through the Electron Microscopy, most of my phages seem to all come in pairs. The way the phages looked reminded me of a cherry, and a metaphor, "cherry on top." A "cherry on top" means metaphorically something tiny and special is added at the end to make it more enriched. I wanted my phage to be that "cherry on top." "Lim" is my last name and I replaced "top" with it tribute to my family.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 8, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1468
Genome length (bp)48948
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCGGCGGTAGGCTT
GC Content60.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionLa Sierra University
Annotation StatusBeing Annotated (Expected completion by 10/8/2019)
Plaque Notesclear plaque, lytic; round, small, less than 1mm
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload