Gordonia phage HippoPololi
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage HippoPololi
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByLaPrecious Harris and Hayley Mahan
Year Found2023
Location FoundDurham, NC United States
Finding InstitutionDurham Technical Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates35.99537 N, 78.88285 W Map
Discovery NotesFound in LaPrecious’s backyard in her soil.
Naming NotesWe named our phage “Hungry Hippo” in Hawaiian because the phage consumed all of the bacteria from the first set of plates.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 20, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage151
Genome length (bp)45423
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGTAGGCAT
GC Content61.2%
Sequencing NotesThis phage was sequenced as part of a DOGEMS sample.
Fasta file available?Yes: Download fasta file
Characterization
ClusterCT
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionDurham Technical Community College
Annotation StatusIn GenBank
Plaque Notes1 mm
Number of Genes68
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

HippoPololi_1

HippoPololi_2
(terminase small subunit)

HippoPololi_3

HippoPololi_4

HippoPololi_5

HippoPololi_6
(terminase large subunit)

HippoPololi_7
(portal protein)

HippoPololi_8

HippoPololi_9
(scaffolding protein)

HippoPololi_10
(major capsid protein)

HippoPololi_11
(head-to-tail adaptor)

HippoPololi_12
(head-to-tail stopper)

HippoPololi_13

HippoPololi_14
(tail terminator)

HippoPololi_15
(major tail protein)

HippoPololi_16
(tail assembly chaperone)

HippoPololi_17
(tail assembly chaperone)

HippoPololi_18
(tape measure protein)

HippoPololi_19
(minor tail protein)

HippoPololi_20
(minor tail protein)

HippoPololi_21
(minor tail protein)

HippoPololi_22
(lysin A L-Ala-D-Glu peptidase domain)

HippoPololi_23
(lysin A glycosyl hydrolase domain)

HippoPololi_24

HippoPololi_25

HippoPololi_26

HippoPololi_27

HippoPololi_28

HippoPololi_29
(minor tail protein)

HippoPololi_30

HippoPololi_31

HippoPololi_32

HippoPololi_33
(helix-turn-helix DNA binding domain)

HippoPololi_34

HippoPololi_35

HippoPololi_36
(VRR-Nuc domain protein)

HippoPololi_37

HippoPololi_38
(ASCE ATPase)

HippoPololi_39
(Cas4 exonuclease)

HippoPololi_40
(DNA polymerase I)

HippoPololi_41
(deoxycytidylate deaminase)

HippoPololi_42

HippoPololi_43
(lysin B)

HippoPololi_44
(thymidylate synthase)

HippoPololi_45

HippoPololi_46

HippoPololi_47
(dUTPase)

HippoPololi_48
(thymidylate kinase)

HippoPololi_49
(lipoprotein)

HippoPololi_50
(DNA helicase)

HippoPololi_51

HippoPololi_52

HippoPololi_53

HippoPololi_54
(DNA primase/helicase)

HippoPololi_55

HippoPololi_56

HippoPololi_57

HippoPololi_58

HippoPololi_59

HippoPololi_60

HippoPololi_61

HippoPololi_62

HippoPololi_63

HippoPololi_64

HippoPololi_65

HippoPololi_66

HippoPololi_67

HippoPololi_68
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP978879
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 175
Pitt Freezer Box Grid# H4
Available Files
GenBank File for PhameratorDownload