| Detailed Information for Phage MaVan | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Trang Thien Ma |
| Year Found | 2023 |
| Location Found | Tampa, FL USA |
| Finding Institution | University of South Florida |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 28.06575 N, 82.4296 W Map |
| Discovery Notes | The soil sample was collected in the ground sewer by a small pond near Walmart Supercenter in Tampa, FL. The surrounding was filled with trash and dirt, smelling quite stinky. The environmental temperature was approximately 32 degrees Celsius, and the weather was sunny and windy. The sample was highly wet, fluid, smelly, and contained much dirt and leaves. |
| Naming Notes | The phage was named after my father's last name - MA, and my mother's last name - VAN. This is my first authentic research ever and I treasure every opportunity I got during this journey. My parents spent their whole life working very hard to support all my decisions and the path I chose. They could not be here to witness this journey with me, so I wanted to do this as a present to appreciate them. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 6, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1495 |
| Genome length (bp) | 45366 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCAT |
| GC Content | 61.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira BigChungus BillDoor Biskit Burnsey Button Buttrmlkdreams Carsonalex CherryonLim Cleo Cozz Dre3 Elinal Eliott Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Sopespian SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Yakult Yarn Yummy Zareef |
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Plaque Notes | Both small and quite large, round and temperate. |
| Morphotype | Siphoviridae |
| Number of Genes | 66 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewMaVan_1 MaVan_2 MaVan_3 MaVan_4 MaVan_5 MaVan_6 MaVan_7 MaVan_8 MaVan_9 MaVan_10 MaVan_11 MaVan_12 MaVan_13 MaVan_14 MaVan_15 MaVan_16 MaVan_17 MaVan_18 MaVan_19 MaVan_20 MaVan_21 MaVan_22 MaVan_23 MaVan_24 MaVan_25 MaVan_26 MaVan_27 MaVan_28 MaVan_29 MaVan_30 MaVan_31 MaVan_32 MaVan_33 MaVan_34 MaVan_35 MaVan_36 MaVan_37 MaVan_38 MaVan_39 MaVan_40 MaVan_41 MaVan_42 MaVan_43 MaVan_44 MaVan_45 MaVan_46 MaVan_47 MaVan_48 MaVan_49 MaVan_50 MaVan_51 MaVan_52 MaVan_53 MaVan_54 MaVan_55 MaVan_56 MaVan_57 MaVan_58 MaVan_59 MaVan_60 MaVan_61 MaVan_62 MaVan_63 MaVan_64 MaVan_65 MaVan_66 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PP725416 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 172 |
| Pitt Freezer Box Grid# | G6 |
| Available Files | |
| GenBank File for Phamerator | Download |