| Detailed Information for Phage Socotra | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Zain Murtaz |
| Year Found | 2024 |
| Location Found | Philadelphia, PA United States |
| Finding Institution | La Salle University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.038056 N, 75.155278 W Map |
| Naming Notes | The name comes from the island in the Indian Ocean known as Socotra. I love seeing photos of the unique plants on the island. I also think the language spoken there is interesting. I just like the name of the island and decided to use a name that I like the sound of. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 24, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 2722 |
| Genome length (bp) | 46582 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCTT |
| GC Content | 60.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira Bavilard BigChungus BillDoor Biskit Blondies Burnsey Button Buttrmlkdreams CanesSauce Carsonalex CherryonLim ChickenTender ChocoMunchkin Cleo Cozz Dre3 Elinal Eliott Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Socotra Sopespian Starburst SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Yakult Yarn Yucky Yummy Zareef |
| Annotating Institution | La Salle University |
| Annotation Status | Being Annotated (Expected completion by 5/1/2026) |
| Number of Genes | 71 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSocotra_1 Socotra_2 Socotra_3 Socotra_4 Socotra_5 Socotra_6 Socotra_7 Socotra_8 Socotra_9 Socotra_10 Socotra_11 Socotra_12 Socotra_13 Socotra_14 Socotra_15 Socotra_16 Socotra_17 Socotra_18 Socotra_19 Socotra_20 Socotra_21 Socotra_22 Socotra_23 Socotra_24 Socotra_25 Socotra_26 Socotra_27 Socotra_28 Socotra_29 Socotra_30 Socotra_31 Socotra_32 Socotra_33 Socotra_34 Socotra_35 Socotra_36 Socotra_37 Socotra_38 Socotra_39 Socotra_40 Socotra_41 Socotra_42 Socotra_43 Socotra_44 Socotra_45 Socotra_46 Socotra_47 Socotra_48 Socotra_49 Socotra_50 Socotra_51 Socotra_52 Socotra_53 Socotra_54 Socotra_55 Socotra_56 Socotra_57 Socotra_58 Socotra_59 Socotra_60 Socotra_61 Socotra_62 Socotra_63 Socotra_64 Socotra_65 Socotra_66 Socotra_67 Socotra_68 Socotra_69 Socotra_70 Socotra_71 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |