| Detailed Information for Phage Sopespian | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Jessica Stockert |
| Year Found | 2020 |
| Location Found | Aberdeen, SD Brown |
| Finding Institution | Northern State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 22°C |
| GPS Coordinates | 45.69067 N, 98.302521 W Map |
| Discovery Notes | This virus was isolated from an environmental sample taken from the edge of Sand Lake including wrack water, some silt and sludge plus a few snails. August 23rd late in the evening. |
| Naming Notes | This virus was named after this character in the Chronicles of Narnia: Prince Caspian because this virus reminds me of the Telmarine lord who aided in the conquering of Narnia. During the novel, lord Sopespian kills his king to take over the kingdom. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 19, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 699 |
| Genome length (bp) | 46086 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCTT |
| GC Content | 60.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira BigChungus BillDoor Biskit Burnsey Button Buttrmlkdreams Carsonalex CherryonLim Cleo Cozz Dre3 Elinal Eliott Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Sopespian SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Yakult Yarn Yummy Zareef |
| Annotating Institution | Northern State University |
| Annotation Status | Being Annotated (Expected completion by 12/31/2024) |
| Plaque Notes | More lysogenic (blurry) than lytic on G. rubripertincta. 0.5 -1 mm in diameter; rarely larger than that. |
| Number of Genes | 65 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSopespian_1 Sopespian_2 Sopespian_3 Sopespian_4 Sopespian_5 Sopespian_6 Sopespian_7 Sopespian_8 Sopespian_9 Sopespian_10 Sopespian_11 Sopespian_12 Sopespian_13 Sopespian_14 Sopespian_15 Sopespian_16 Sopespian_17 Sopespian_18 Sopespian_19 Sopespian_20 Sopespian_21 Sopespian_22 Sopespian_23 Sopespian_24 Sopespian_25 Sopespian_26 Sopespian_27 Sopespian_28 Sopespian_29 Sopespian_30 Sopespian_31 Sopespian_32 Sopespian_33 Sopespian_34 Sopespian_35 Sopespian_36 Sopespian_37 Sopespian_38 Sopespian_39 Sopespian_40 Sopespian_41 Sopespian_42 Sopespian_43 Sopespian_44 Sopespian_45 Sopespian_46 Sopespian_47 Sopespian_48 Sopespian_49 Sopespian_50 Sopespian_51 Sopespian_52 Sopespian_53 Sopespian_54 Sopespian_55 Sopespian_56 Sopespian_57 Sopespian_58 Sopespian_59 Sopespian_60 Sopespian_61 Sopespian_62 Sopespian_63 Sopespian_64 Sopespian_65 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |