Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Jimmy Vo |
Year Found | 2021 |
Location Found | Jeffersonville, IN United States |
Finding Institution | Indiana University-Southeast |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 26°C |
GPS Coordinates | 38.314609 N, 85.693118 W Map |
Discovery Notes | The soil sample was found in front of my house next to a bush and where I put my trash. I picked a spot with little grass and needed a shovel due to how tough and dry the soil was. Once in a bag, it was mushy, moist, and soft. |
Naming Notes | The bacteriophage was named Survivor because the spot test used after Enriched Isolation was contaminated. There was also a large spot of contamination next to the sample. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 8, 2022 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 735 |
Genome length (bp) | 45436 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTAGGCAT |
GC Content | 61.8% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CT |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | Indiana University-Southeast |
Annotation Status | In GenBank |
Plaque Notes | When there is a little number of plaques on the plaque assay, they have spread far apart and are hard to see. The morphology is cloudy with no clear or consistent shape like a small dot. The diameter is half a millimeter. However, when highly concentrated the plaques are clumped together in one area and are clear. The plaques are dark with a perfectly round shape. |
Morphotype | Siphoviridae |
Number of Genes | 69 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | ON970576 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
139 |
Pitt Freezer Box Grid# |
F3 |
Available Files |
GenBank File for Phamerator | Download |