| Detailed Information for Phage CherryonLim |
| Discovery Information |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Diana Lim |
| Year Found | 2019 |
| Location Found | Riverside, CA USA |
| Finding Institution | La Sierra University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 12°C |
| GPS Coordinates | 33.9094 N, 117.4987 W Map |
| Discovery Notes | soil description: Very wet, dark brown, full of organic matter |
| Naming Notes | CherryonLim
When seen through the Electron Microscopy, most of my phages seem to all come in pairs. The way the phages looked reminded me of a cherry, and a metaphor, "cherry on top." A "cherry on top" means metaphorically something tiny and special is added at the end to make it more enriched. I wanted my phage to be that "cherry on top." "Lim" is my last name and I replaced "top" with it tribute to my family. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Apr 8, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1468 |
| Genome length (bp) | 48948 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 13 bases |
| Overhang Sequence | CGGCGGTAGGCTT |
| GC Content | 60.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | La Sierra University |
| Annotation Status | In GenBank |
| Plaque Notes | clear plaque, lytic; round, small, less than 1mm |
| Morphotype | Siphoviridae |
| Number of Genes | 72 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN284906 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
92 |
| Pitt Freezer Box Grid# |
H2 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
