| Detailed Information for Phage RanchParmCat |
| Discovery Information |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Joel, Kailee, and Lauren |
| Year Found | 2024 |
| Location Found | Pittsburgh, PA United States |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.44875 N, 79.95256 W Map |
| Discovery Notes | Discovered by Kailee Shreiner, Joel Hurdle, and Lauren Crump
The soil was collected outside of Kailees house in a bed of flowers. There is pavement around the flower bed. The soil was very dark, not very mulchy, smaller pieces of soil, and the texture was moist. |
| Naming Notes | RanchParmCat originated from the idea of combining the three of our favorite things. Kailees being ranch, Laurens being chicken parm (abbreviated to parm), and Joels being cat, creating the name RanchParmCat |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 2, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 5157 |
| Genome length (bp) | 47226 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCAT |
| GC Content | 62.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 74 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PQ868985 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
189 |
| Pitt Freezer Box Grid# |
B3 |
| Available Files |
| GenBank File for Phamerator | Download |