| Detailed Information for Phage RanchParmCat | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Joel, Kailee, and Lauren |
| Year Found | 2024 |
| Location Found | Pittsburgh, PA United States |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.44875 N, 79.95256 W Map |
| Discovery Notes | Discovered by Kailee Shreiner, Joel Hurdle, and Lauren Crump The soil was collected outside of Kailees house in a bed of flowers. There is pavement around the flower bed. The soil was very dark, not very mulchy, smaller pieces of soil, and the texture was moist. |
| Naming Notes | RanchParmCat originated from the idea of combining the three of our favorite things. Kailees being ranch, Laurens being chicken parm (abbreviated to parm), and Joels being cat, creating the name RanchParmCat |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 2, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 5157 |
| Genome length (bp) | 47226 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCAT |
| GC Content | 62.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira BigChungus BillDoor Biskit Burnsey Button Buttrmlkdreams Carsonalex CherryonLim Cleo Cozz Dre3 Elinal Eliott Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Sopespian SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Yakult Yarn Yummy Zareef |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Being Annotated (Expected completion by 1/2/2025) |
| Morphotype | Siphoviridae |
| Number of Genes | 72 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewRanchParmCat_1 RanchParmCat_2 RanchParmCat_3 RanchParmCat_4 RanchParmCat_5 RanchParmCat_6 RanchParmCat_7 RanchParmCat_8 RanchParmCat_9 RanchParmCat_10 RanchParmCat_11 RanchParmCat_12 RanchParmCat_13 RanchParmCat_14 RanchParmCat_15 RanchParmCat_16 RanchParmCat_17 RanchParmCat_18 RanchParmCat_19 RanchParmCat_20 RanchParmCat_21 RanchParmCat_22 RanchParmCat_23 RanchParmCat_24 RanchParmCat_25 RanchParmCat_26 RanchParmCat_27 RanchParmCat_28 RanchParmCat_29 RanchParmCat_30 RanchParmCat_31 RanchParmCat_32 RanchParmCat_33 RanchParmCat_34 RanchParmCat_35 RanchParmCat_36 RanchParmCat_37 RanchParmCat_38 RanchParmCat_39 RanchParmCat_40 RanchParmCat_41 RanchParmCat_42 RanchParmCat_43 RanchParmCat_44 RanchParmCat_45 RanchParmCat_46 RanchParmCat_47 RanchParmCat_48 RanchParmCat_49 RanchParmCat_50 RanchParmCat_51 RanchParmCat_52 RanchParmCat_53 RanchParmCat_54 RanchParmCat_55 RanchParmCat_56 RanchParmCat_57 RanchParmCat_58 RanchParmCat_59 RanchParmCat_60 RanchParmCat_61 RanchParmCat_62 RanchParmCat_63 RanchParmCat_64 RanchParmCat_65 RanchParmCat_66 RanchParmCat_67 RanchParmCat_68 RanchParmCat_69 RanchParmCat_70 RanchParmCat_71 RanchParmCat_72 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 189 |
| Pitt Freezer Box Grid# | B3 |