| Detailed Information for Phage Typhonomachy | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Naomi Whiteside & Matthew Jacoby |
| Year Found | 2023 |
| Location Found | Fairfax, VA The United States of America |
| Finding Institution | George Mason University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 23°C |
| GPS Coordinates | 38.82968 N, 77.305838 W Map |
| Discovery Notes | Naomi isolated the phage from mulchy soil after a short rain period. The soil sample was collected approximately 4 meters from Planetary hall and 6 meters from the entrance to Exploratory hall. |
| Naming Notes | The Typhon is a mythological creature in Greek mythology. It is known for being the last and greatest battle of Zeus in his claim to the ruler of the Gods. We spent 4 weeks trying to isolate this phage and have met struggles of contamination of the bacteria and media as well as poor amplification of the phage. Given this is our Senior year, we found this a fitting name. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 16, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1949 |
| Genome length (bp) | 46294 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCTT |
| GC Content | 60.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira BigChungus BillDoor Biskit Burnsey Button Buttrmlkdreams Carsonalex CherryonLim Cleo Cozz Dre3 Elinal Eliott Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Sopespian SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Yakult Yarn Yummy Zareef |
| Annotating Institution | George Mason University |
| Annotation Status | Being Annotated (Expected completion by 1/15/2025) |
| Plaque Notes | Plaques are about 1 mm in diameter and are turbid suggesting a temperate phage. |
| Morphotype | Siphoviridae |
| Number of Genes | 71 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewTyphonomachy_1 Typhonomachy_2 Typhonomachy_3 Typhonomachy_4 Typhonomachy_5 Typhonomachy_6 Typhonomachy_7 Typhonomachy_8 Typhonomachy_9 Typhonomachy_10 Typhonomachy_11 Typhonomachy_12 Typhonomachy_13 Typhonomachy_14 Typhonomachy_15 Typhonomachy_16 Typhonomachy_17 Typhonomachy_18 Typhonomachy_19 Typhonomachy_20 Typhonomachy_21 Typhonomachy_22 Typhonomachy_23 Typhonomachy_24 Typhonomachy_25 Typhonomachy_26 Typhonomachy_27 Typhonomachy_28 Typhonomachy_29 Typhonomachy_30 Typhonomachy_31 Typhonomachy_32 Typhonomachy_33 Typhonomachy_34 Typhonomachy_35 Typhonomachy_36 Typhonomachy_37 Typhonomachy_38 Typhonomachy_39 Typhonomachy_40 Typhonomachy_41 Typhonomachy_42 Typhonomachy_43 Typhonomachy_44 Typhonomachy_45 Typhonomachy_46 Typhonomachy_47 Typhonomachy_48 Typhonomachy_49 Typhonomachy_50 Typhonomachy_51 Typhonomachy_52 Typhonomachy_53 Typhonomachy_54 Typhonomachy_55 Typhonomachy_56 Typhonomachy_57 Typhonomachy_58 Typhonomachy_59 Typhonomachy_60 Typhonomachy_61 Typhonomachy_62 Typhonomachy_63 Typhonomachy_64 Typhonomachy_65 Typhonomachy_66 Typhonomachy_67 Typhonomachy_68 Typhonomachy_69 Typhonomachy_70 Typhonomachy_71 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.38 E09 |
| Pitt Freezer Box# | 170 |
| Pitt Freezer Box Grid# | A1 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
