| Detailed Information for Phage Yucky | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Mackenzie Sanders, Kira Brown, Madeline Kaiser |
| Year Found | 2024 |
| Location Found | Jeffersonville, IN United States |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 26°C |
| GPS Coordinates | 38.35299 N, 85.71948 W Map |
| Discovery Notes | Shelia Gustafson found the soil sample in her backyard located in Jeffersonville, Indiana. The soil was very dark brown in color, very moist (almost like clay), and had small clumps of wood in it (likely mulch). |
| Naming Notes | Was looking through other phage names and thought one of them was gross, so Yucky was born. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 9, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 3577 |
| Genome length (bp) | 47803 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGTAGGCTT |
| GC Content | 60.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CT |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAgatha AikoCarson Amok AndPeggy Axym Azira Bavilard BigChungus BillDoor Biskit Blondies Burnsey Button Buttrmlkdreams CanesSauce Carsonalex CherryonLim ChickenTender ChocoMunchkin Cleo Cozz Dre3 Elinal Eliott Emalyn Feastonyeet Fribs8 Gibbous GiKK GoldHunter GTE2 Hexbug HippoPololi Horseradish Jamzy KayGee Lauer MAnor Margaret MaVan Mayweather MScarn MunkgeeRoachy Nibbles Nina Nodigi Orla Pons PotPie PsychoKiller Quasar RanchParmCat RedBaron SheckWes SketchMex Sopespian Starburst SteamedHams SummitAcademy Survivors SweatNTears Tolls Troje Typhonomachy Vine Yakult Yarn Yucky Yummy Zareef |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | Being Annotated (Expected completion by 5/1/2025) |
| Morphotype | Siphoviridae |
| Number of Genes | 74 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewYucky_1 Yucky_2 Yucky_3 Yucky_4 Yucky_5 Yucky_6 Yucky_7 Yucky_8 Yucky_9 Yucky_10 Yucky_11 Yucky_12 Yucky_13 Yucky_14 Yucky_15 Yucky_16 Yucky_17 Yucky_18 Yucky_19 Yucky_20 Yucky_21 Yucky_22 Yucky_23 Yucky_24 Yucky_25 Yucky_26 Yucky_27 Yucky_28 Yucky_29 Yucky_30 Yucky_31 Yucky_32 Yucky_33 Yucky_34 Yucky_35 Yucky_36 Yucky_37 Yucky_38 Yucky_39 Yucky_40 Yucky_41 Yucky_42 Yucky_43 Yucky_44 Yucky_45 Yucky_46 Yucky_47 Yucky_48 Yucky_49 Yucky_50 Yucky_51 Yucky_52 Yucky_53 Yucky_54 Yucky_55 Yucky_56 Yucky_57 Yucky_58 Yucky_59 Yucky_60 Yucky_61 Yucky_62 Yucky_63 Yucky_64 Yucky_65 Yucky_66 Yucky_67 Yucky_68 Yucky_69 Yucky_70 Yucky_71 Yucky_72 Yucky_73 Yucky_74 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |