| Detailed Information for Phage Berrie | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Daria Di Blasi |
| Year Found | 2021 |
| Location Found | Los Angeles, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 34.020221 N, 118.382866 W Map |
| Discovery Notes | Very dry, fine, and rocky soil taken from a depth of 16cm. Air temperature was 21.7 C. AL Quarter and Lab section: F21-1A Instructor: Amanda Freise; Ana Garcia Vedrenne Teaching Assistant: Dominic Garza Undergraduate Assistant(s): Jennifer Nguyen Team Name: Phage Pham Team Members: Valeria Chavez, Celine Cheng, Evan Cosentino, Alicia Gibbons |
| Naming Notes | We were in a strawberry lipstick state of mind. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 13, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1524 |
| Genome length (bp) | 43804 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CGAAGGGGCAT |
| GC Content | 66.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AZ |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewAdolin Adumb2043 AEgle AGrandiflora Amyev Asa16 Ascela Berrie Cassia Community Crewmate Cyan DrManhattan DrSierra Elezi Emotion Eraser Iter Janeemi Joemato JohnDoe Jstan Kaylissa KeAlii Lego Liebe Lizalica London MaGuCo Maureen Mudpuppy Niobe Nitro ObiToo Phives Pixelle Powerpuff Reedo Simpson Snek Tallboi Tbone TforTroy Tian Tuck Tutumahutu Tweety19 VResidence VroomVroom Warda Wildwest Yang YesChef |
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | Overdue (Expected completion by 12/1/2022) |
| Plaque Notes | Turbid plaques with diameter ranging from 2-3mm |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBerrie_Draft_1 Berrie_Draft_2 Berrie_Draft_3 Berrie_Draft_4 Berrie_Draft_5 Berrie_Draft_6 Berrie_Draft_7 Berrie_Draft_8 Berrie_Draft_9 Berrie_Draft_10 Berrie_Draft_11 Berrie_Draft_12 Berrie_Draft_13 Berrie_Draft_14 Berrie_Draft_15 Berrie_Draft_16 Berrie_Draft_17 Berrie_Draft_18 Berrie_Draft_19 Berrie_Draft_20 Berrie_Draft_21 Berrie_Draft_22 Berrie_Draft_23 Berrie_Draft_24 Berrie_Draft_25 Berrie_Draft_26 Berrie_Draft_27 Berrie_Draft_28 Berrie_Draft_29 Berrie_Draft_30 Berrie_Draft_31 Berrie_Draft_32 Berrie_Draft_33 Berrie_Draft_34 Berrie_Draft_35 Berrie_Draft_36 Berrie_Draft_37 Berrie_Draft_38 Berrie_Draft_39 Berrie_Draft_40 Berrie_Draft_41 Berrie_Draft_42 Berrie_Draft_43 Berrie_Draft_44 Berrie_Draft_45 Berrie_Draft_46 Berrie_Draft_47 Berrie_Draft_48 Berrie_Draft_49 Berrie_Draft_50 Berrie_Draft_51 Berrie_Draft_52 Berrie_Draft_53 Berrie_Draft_54 Berrie_Draft_55 Berrie_Draft_56 Berrie_Draft_57 Berrie_Draft_58 Berrie_Draft_59 Berrie_Draft_60 Berrie_Draft_61 Berrie_Draft_62 Berrie_Draft_63 Berrie_Draft_64 Berrie_Draft_65 Berrie_Draft_66 Berrie_Draft_67 Berrie_Draft_68 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 139 |
| Pitt Freezer Box Grid# | F6 |
| Available Files | |
| Plaque Picture | Download |