Arthrobacter phage JohnDoe
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Detailed Information for Phage JohnDoe
Discovery Information
Isolation HostArthrobacter globiformis NRRL B-2880
Found ByCiara Heffernan
Year Found2021
Location FoundOttawa, AZ Canada
Finding InstitutionUniversity of Ottawa
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature20°C
GPS Coordinates45.294772 N, 75.733288 W Map
Discovery NotesThe soil was dark and moist and at the base of a hedge near an in-ground pool.
Naming NotesAfter asking my friends and family for suggestions and receiving only the answer to name it after them. My phage remained nameless. Thus, I thought JohnDoe would be quite a fitting name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2189
Genome length (bp)43764
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGAAGGGGCAT
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAZ
SubclusterAZ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Ottawa
Annotation StatusIn GenBank
Plaque NotesMedium size plaques with a very light inner ring, giving it a faint bullseye appearance.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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JohnDoe_1
(terminase small subunit)

JohnDoe_2
(terminase large subunit)

JohnDoe_3
(portal protein)

JohnDoe_4
(capsid maturation protease and VIP2-like ADP-ribosyltransferase toxin)

JohnDoe_5

JohnDoe_6
(scaffolding protein)

JohnDoe_7
(major capsid protein)

JohnDoe_8
(head-to-tail adaptor)

JohnDoe_9

JohnDoe_10
(head-to-tail stopper)

JohnDoe_11

JohnDoe_12
(tail terminator)

JohnDoe_13
(major tail protein)

JohnDoe_14
(tail assembly chaperone)

JohnDoe_15
(tail assembly chaperone)

JohnDoe_16
(tape measure protein)

JohnDoe_17
(minor tail protein)

JohnDoe_18
(minor tail protein)

JohnDoe_19
(minor tail protein)

JohnDoe_20
(minor tail protein)

JohnDoe_21

JohnDoe_22

JohnDoe_23

JohnDoe_24
(deoxynucleoside monophosphate kinase)

JohnDoe_25

JohnDoe_26
(Cas4 family exonuclease)

JohnDoe_27
(nucleoside deoxyribosyltransferase)

JohnDoe_28
(LAGLIDADG endonuclease)

JohnDoe_29
(recombination directionality factor)

JohnDoe_30

JohnDoe_31

JohnDoe_32

JohnDoe_33
(NrdH-like glutaredoxin)

JohnDoe_34

JohnDoe_35
(holliday junction resolvase)

JohnDoe_36

JohnDoe_37
(DNA methyltransferase)

JohnDoe_38
(DNA primase/helicase)

JohnDoe_39

JohnDoe_40

JohnDoe_41
(DNA polymerase I)

JohnDoe_42

JohnDoe_43
(DNA ligase)

JohnDoe_44

JohnDoe_45
(DNA binding protein)

JohnDoe_46
(helix-turn-helix DNA binding domain protein)

JohnDoe_47
(SprT-like protease)

JohnDoe_48

JohnDoe_49

JohnDoe_50
(serine integrase)

JohnDoe_51

JohnDoe_52
(RNA binding protein)

JohnDoe_53

JohnDoe_54

JohnDoe_55

JohnDoe_56

JohnDoe_57

JohnDoe_58
(endolysin)

JohnDoe_59

JohnDoe_60

JohnDoe_61

JohnDoe_62

JohnDoe_63

JohnDoe_64

JohnDoe_65

JohnDoe_66

JohnDoe_67

JohnDoe_68

JohnDoe_69

JohnDoe_70
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOQ709207
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4x10^9
Pitt Freezer Box# 133
Pitt Freezer Box Grid# C10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload