| Detailed Information for Phage Niobe | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Erica Sellers |
| Year Found | 2020 |
| Location Found | New Haven, CT United States |
| Finding Institution | Southern Connecticut State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 41.33349 N, 72.945666 W Map |
| Discovery Notes | Found at the edge of a garden near a building. Garden contained plants such as pachysandra, rhododendron, and some kind of ivy. The area had no disturbed soil indicating no recent animal activity, and was largely shaded by vegetation, getting little sunlight. The weather had ranged from 32.8°C-16.1°C in the week before collection. There had been devastating thunderstorms the week before collection. Depth: 4cm Temperature when collected: 18.3°C |
| Naming Notes | Named after the queen from Greek mythology. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 7, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1729 |
| Genome length (bp) | 43602 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CGAAGGGGCAT |
| GC Content | 66.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AZ |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Southern Connecticut State University |
| Annotation Status | Being Annotated (Expected completion by 5/1/2021) |
| Plaque Notes | Average of 8 mm in diameter, circular. Temperature morphology, clear inner circle surrounded by a cloudy outer circle. |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewNiobe_Draft_1 Niobe_Draft_2 Niobe_Draft_3 Niobe_Draft_4 Niobe_Draft_5 Niobe_Draft_6 Niobe_Draft_7 Niobe_Draft_8 Niobe_Draft_9 Niobe_Draft_10 Niobe_Draft_11 Niobe_Draft_12 Niobe_Draft_13 Niobe_Draft_14 Niobe_Draft_15 Niobe_Draft_16 Niobe_Draft_17 Niobe_Draft_18 Niobe_Draft_19 Niobe_Draft_20 Niobe_Draft_21 Niobe_Draft_22 Niobe_Draft_23 Niobe_Draft_24 Niobe_Draft_25 Niobe_Draft_26 Niobe_Draft_27 Niobe_Draft_28 Niobe_Draft_29 Niobe_Draft_30 Niobe_Draft_31 Niobe_Draft_32 Niobe_Draft_33 Niobe_Draft_34 Niobe_Draft_35 Niobe_Draft_36 Niobe_Draft_37 Niobe_Draft_38 Niobe_Draft_39 Niobe_Draft_40 Niobe_Draft_41 Niobe_Draft_42 Niobe_Draft_43 Niobe_Draft_44 Niobe_Draft_45 Niobe_Draft_46 Niobe_Draft_47 Niobe_Draft_48 Niobe_Draft_49 Niobe_Draft_50 Niobe_Draft_51 Niobe_Draft_52 Niobe_Draft_53 Niobe_Draft_54 Niobe_Draft_55 Niobe_Draft_56 Niobe_Draft_57 Niobe_Draft_58 Niobe_Draft_59 Niobe_Draft_60 Niobe_Draft_61 Niobe_Draft_62 Niobe_Draft_63 Niobe_Draft_64 Niobe_Draft_65 Niobe_Draft_66 Niobe_Draft_67 Niobe_Draft_68 Niobe_Draft_69 Niobe_Draft_70 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| SEA Lysate Titer | 7.5e10 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |