| Discovery Information |
| Isolation Host | Arthrobacter sulfureus ATCC 19098 |
| Found By | Sophia Pulido |
| Year Found | 2023 |
| Location Found | Los Angeles, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 34.05683 N, 118.443697 W Map |
| Discovery Notes | AL Quarter and Lab section (ie. F19-1A): S23-1A
Instructor: Dr. Tejas Bouklas
Teaching Assistant: Dominic Garza
Undergraduate Assistant(s): Samantha Padilla and Trinity Vu
Team #1 Name: Biohazards
Team #1 Members: Sarah Shao, Riley Rosenbluh, Joshua Moore, Yusef Mathkour
Residential landscaping near sprinkler & ornamental plants in a raised bed (~1m above ground level), beside residential road, near Westwood blvd |
| Naming Notes | The phage is named Soondubu after the Korean cuisine. A location near UCLA, Sawtelle, has many famous asian cuisine options, including some very tasty soondubu items. So, this phage is named to commemorate that. The word soondubu is also fun to say. Give it a try! |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Sep 6, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 101 |
| Genome length (bp) | 45143 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CGAAGGGGCAT |
| GC Content | 64.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | AZ |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | In GenBank |
| Plaque Notes | clear center, turbid edges, diameter ~1-2mm |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PP978807 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
184 |
| Pitt Freezer Box Grid# |
E12 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
