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Curtobacterium phage Cappuccino
Cappuccino Plaque Picture
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Detailed Information for Phage Cappuccino
Discovery Information
Isolation HostCurtobacterium flaccumfaciens NRRL B-59340
Found ByAlex Spizer
Year Found2024
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.44015 N, 79.95648 W Map
Discovery NotesAnnotated by Alex Spizer
Naming NotesNamed after my favorite coffee drink.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedOct 1, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage291
Genome length (bp)40053
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGAAACGGCAT
GC Content70.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAZ
SubclusterAZ5
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesMedium to large clear plaques
Number of Genes62
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Cappuccino_1
(terminase, small subunit)

Cappuccino_2
(terminase, large subunit)

Cappuccino_3
(portal protein)

Cappuccino_4
(capsid maturation protease)

Cappuccino_5
(endolysin)

Cappuccino_6
(scaffolding protein)

Cappuccino_7
(major capsid protein)

Cappuccino_8
(head-to-tail adaptor)

Cappuccino_9

Cappuccino_10
(head-to-tail stopper)

Cappuccino_11

Cappuccino_12
(tail terminator)

Cappuccino_13
(major tail protein)

Cappuccino_14
(tail assembly chaperone)

Cappuccino_15
(tail assembly chaperone)

Cappuccino_16
(tape measure protein)

Cappuccino_17
(minor tail protein)

Cappuccino_18
(minor tail protein)

Cappuccino_19
(minor tail protein)

Cappuccino_20
(minor tail protein)

Cappuccino_21

Cappuccino_22

Cappuccino_23

Cappuccino_24
(deoxynucleoside monophosphate kinase)

Cappuccino_25

Cappuccino_26
(Cas4 family exonuclease)

Cappuccino_27
(LAGLIDADG endonuclease)

Cappuccino_28

Cappuccino_29
(recombination directionality factor)

Cappuccino_30

Cappuccino_31
(NrdH-like glutaredoxin)

Cappuccino_32

Cappuccino_33

Cappuccino_34

Cappuccino_35
(Holliday junction resolvase)

Cappuccino_36
(DNA primase/helicase)

Cappuccino_37

Cappuccino_38
(DNA polymerase I)

Cappuccino_39

Cappuccino_40

Cappuccino_41
(DNA binding protein)

Cappuccino_42

Cappuccino_43
(serine integrase)

Cappuccino_44

Cappuccino_45
(RNA binding protein)

Cappuccino_46

Cappuccino_47

Cappuccino_48

Cappuccino_49

Cappuccino_50

Cappuccino_51

Cappuccino_52

Cappuccino_53
(DNA methyltransferase)

Cappuccino_54

Cappuccino_55

Cappuccino_56

Cappuccino_57

Cappuccino_58

Cappuccino_59

Cappuccino_60

Cappuccino_61 — tRNA
(tRNA-Asn(gtt))

Cappuccino_62

Cappuccino_63
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPQ868948
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
GenBank File for PhameratorDownload